Development and implementation of biodiversity information for sustainable management of South Australian groundwater. Clean potable water is one of the most important resources for human health and a successful economy. Increasingly, subterranean aquifers are used for storage and recovery of water. These aquifers contain dynamic ecosystems, but little is known about species composition or about the importance of the presence of various species for water quality. We will use the latest laborator ....Development and implementation of biodiversity information for sustainable management of South Australian groundwater. Clean potable water is one of the most important resources for human health and a successful economy. Increasingly, subterranean aquifers are used for storage and recovery of water. These aquifers contain dynamic ecosystems, but little is known about species composition or about the importance of the presence of various species for water quality. We will use the latest laboratory techniques and DNA identification methods to provide a template for determining ground water diversity and food web dynamics throughout Australia. This project will lead to a better understanding of how to manage ground water in a sustainable manner.Read moreRead less
Analysing and modelling molecular rate variation among nuclear and mitochondrial genomes. My research will have important practical benefits for bioinformaticians and evolutionary biologists, because existing analytical methods will be rigorously tested and new tools will be developed. Australia has a comparatively high concentration of researchers in this field, so my research will foster domestic collaboration and import international expertise. The research will provide important insights int ....Analysing and modelling molecular rate variation among nuclear and mitochondrial genomes. My research will have important practical benefits for bioinformaticians and evolutionary biologists, because existing analytical methods will be rigorously tested and new tools will be developed. Australia has a comparatively high concentration of researchers in this field, so my research will foster domestic collaboration and import international expertise. The research will provide important insights into the rates and patterns of genetic changes associated with domestication, and into variation in evolutionary rates among the primate ancestors of humans. In addition to developing new software, which will be made publicly available, I will develop new evolutionary models to supplement existing software packages. Read moreRead less
The Origin and Evolution of the Animal Phyla inferred from Analysis of Multiple-Gene Data. Australia has recently begun an extensive research programme in the genomics of our flora and fauna. The enormous amounts of data that emerge from such research are highly complex, but they hold the key to understanding how biological organisms change over time. Our research will untangle that data to answer fundamental, unanswered questions in modern science: How did the animal groups originate? How are ....The Origin and Evolution of the Animal Phyla inferred from Analysis of Multiple-Gene Data. Australia has recently begun an extensive research programme in the genomics of our flora and fauna. The enormous amounts of data that emerge from such research are highly complex, but they hold the key to understanding how biological organisms change over time. Our research will untangle that data to answer fundamental, unanswered questions in modern science: How did the animal groups originate? How are they related to each other? How is biodiversity changing? The answers to these questions and the new analytical tools we will develop will put Australia firmly on the international "map" of Bioinformatics.Read moreRead less
Molecular identification of blowflies of forensic importance and thermal effects on their behaviour: tools to enhance forensic entomology in Australia. In suspicious deaths in which a body is found three or more days post-mortem, carrion-breeding blowflies provide time since death estimates. These estimates are currently slow and relatively broad due to (a) an inability to adequately distinguish immatures morphologically, and (b) insufficient information on the biological responses of different ....Molecular identification of blowflies of forensic importance and thermal effects on their behaviour: tools to enhance forensic entomology in Australia. In suspicious deaths in which a body is found three or more days post-mortem, carrion-breeding blowflies provide time since death estimates. These estimates are currently slow and relatively broad due to (a) an inability to adequately distinguish immatures morphologically, and (b) insufficient information on the biological responses of different species to temperature. We will develop rapid molecular assays to distinguish blowfly species, and comprehensively chart the behavioural effects of temperature on the most forensically important blowflies. Molecular and adult morphological data will also be used to examine the evolution of the carrion-breeding blowflies.Read moreRead less
Uncovering the evolutionary history of Australasian marsupials: combining molecular phylogenetics and ecological inference. Marsupials are symbolic of the uniqueness of Australia's biological systems and there is widespread public interest in their natural history. Yet we know little of the evolutionary mechanisms that have shaped their biodiversity. This is a critical problem when considered in the context of Australian marsupials having suffered the highest extinction rate of any continental m ....Uncovering the evolutionary history of Australasian marsupials: combining molecular phylogenetics and ecological inference. Marsupials are symbolic of the uniqueness of Australia's biological systems and there is widespread public interest in their natural history. Yet we know little of the evolutionary mechanisms that have shaped their biodiversity. This is a critical problem when considered in the context of Australian marsupials having suffered the highest extinction rate of any continental mammal fauna over the past 200 years. This project will make a major contribution to understanding the origins, timescale and ecological nature of Australasian marsupial evolution. In doing so, it will inform conservation strategy, promote Australasian marsupials as a model system for studying faunal coevolution and develop widely applicable bioinformatic tools.Read moreRead less
Retracing the Early Evolution of Metazoa using Novel Methods and Strategies. Metazoa is one of the best-characterised groups of species in terms of its morphology, fossil record, development, and genetic make-up, but the phylogeny remains obscure because the fossil record is incomplete and because molecular phylogenetic methods have not yet been developed with the complexity of genomic data in mind. We will develop methods and strategies for the analysis of whole genomes, and use them in studies ....Retracing the Early Evolution of Metazoa using Novel Methods and Strategies. Metazoa is one of the best-characterised groups of species in terms of its morphology, fossil record, development, and genetic make-up, but the phylogeny remains obscure because the fossil record is incomplete and because molecular phylogenetic methods have not yet been developed with the complexity of genomic data in mind. We will develop methods and strategies for the analysis of whole genomes, and use them in studies of the mitochondrial genome. We will infer the animal phylogeny, and use it to chart the evolution of animal morphology and development, and the evolution of mitochondrial genetic codes, gene order, and nucleotide content.Read moreRead less
The Cambrian Population Explosion of Arthropods in Australia: Ediacaran origins, evolution and biodiversity. This project addresses key questions on the origin and diversification of life, by investigating the evolution of the most important fossil group (arthropods) across arguably the most important event after the origin of life (the Cambrian explosion of macroscopic life). It will also excavate, promote and conserve two key geological resources of national importance, in the Flinders Ranges ....The Cambrian Population Explosion of Arthropods in Australia: Ediacaran origins, evolution and biodiversity. This project addresses key questions on the origin and diversification of life, by investigating the evolution of the most important fossil group (arthropods) across arguably the most important event after the origin of life (the Cambrian explosion of macroscopic life). It will also excavate, promote and conserve two key geological resources of national importance, in the Flinders Ranges and Kangaroo Island. Also, it will lead to increased knowledge of the palaeoecology and geology of the economically-important Adelaide geosyncline, and benefit rural SA communities through ecotourism, a rural schools education program, and public outreach.Read moreRead less
Quantifying the Tree of Life's Diversity with the Paleobiology Database. The Paleobiology Database is the Internet's key source of scientific data on the fossil record. It records names and classification of fossil organisms and the ages, locations, and environments of the places that yield these fossils. It has often been used to estimate the number of species existing at different points in geological time. Macquarie will house the Database as it is expanded to record evolutionary relations ....Quantifying the Tree of Life's Diversity with the Paleobiology Database. The Paleobiology Database is the Internet's key source of scientific data on the fossil record. It records names and classification of fossil organisms and the ages, locations, and environments of the places that yield these fossils. It has often been used to estimate the number of species existing at different points in geological time. Macquarie will house the Database as it is expanded to record evolutionary relationships of many species. This information will help to estimate dates of origination for major groups such as mammals and birds. It will also help to show whether mass extinctions tend to target old groups with few surviving species, which will help to predict which groups will survive the current mass extinction.Read moreRead less
Improving Insect-based Technology for Minimum Death Time Estimates in Forensic Investigations in Australia. This research will provide more accurate, narrower death time estimates for Australia. Focusing enquiries more accurately around the death time will result in significant financial savings in homicide investigations. Court evidence based on insects will become more robust, thus improving prosecution success. Partnerships will also be enhanced between laboratories with common aims, but di ....Improving Insect-based Technology for Minimum Death Time Estimates in Forensic Investigations in Australia. This research will provide more accurate, narrower death time estimates for Australia. Focusing enquiries more accurately around the death time will result in significant financial savings in homicide investigations. Court evidence based on insects will become more robust, thus improving prosecution success. Partnerships will also be enhanced between laboratories with common aims, but different experience and expertise, thereby avoiding research duplication and producing synergistic effects of collaboration. Casework methodology in Australia will become better aligned, thus avoiding courtroom conflicts between practitioners. Finally, high quality graduate students will be trained in entomological and forensic sciences.Read moreRead less
Function and evolution of optical structures in nature. Designing optical structures that simultaneously satisfy multiple and conflicting criteria and satisfy difficult manufacturing constraints is technologically challenging. However, Nature has been doing this for millions of years. This project is a systematic study of optical structures in one of Nature's most diverse range of species: butterflies. The microstructures inside butterfly scales have an amazing diversity of geometries that produ ....Function and evolution of optical structures in nature. Designing optical structures that simultaneously satisfy multiple and conflicting criteria and satisfy difficult manufacturing constraints is technologically challenging. However, Nature has been doing this for millions of years. This project is a systematic study of optical structures in one of Nature's most diverse range of species: butterflies. The microstructures inside butterfly scales have an amazing diversity of geometries that produce structural colour and are amongst the most complex naturally occurring optical structures produced by a single cell.Read moreRead less