Measuring the flushing time of waters in the Great Barrier Reef. There are concerns both in the scientific community and in the general public about the possible implications of agricultural runoff to the Great Barrier Reef (GBR). Due to this, the Great Barrier Reef Marine Park Authority has developed a "Reef Water Quality Protection Plan" (RWQPP) which may have significant economic implications to the grazing, sugar, and other primary industries. In order to protect the GBR, whilst also minimiz ....Measuring the flushing time of waters in the Great Barrier Reef. There are concerns both in the scientific community and in the general public about the possible implications of agricultural runoff to the Great Barrier Reef (GBR). Due to this, the Great Barrier Reef Marine Park Authority has developed a "Reef Water Quality Protection Plan" (RWQPP) which may have significant economic implications to the grazing, sugar, and other primary industries. In order to protect the GBR, whilst also minimizing the impacts on agricultural industries, it is important to understand the processes that affect the buildup and broad-scale dispersion of contaminants in the GBR. This project will facilitate that understanding.Read moreRead less
Longshore Sediment Supply to the Deep Ocean. The current model to supply sand to deep water off continental margins is that provided by rivers operating at low sea level. We propose an alternative model in which sand is provided by longshore transport to deep water at high sea level north of Fraser Island, SE Queensland. Here we will test the validity of our new model by site studies of sea bottom morphology, composition and dynamics. If the model proves true, we will have: 1) generated an entir ....Longshore Sediment Supply to the Deep Ocean. The current model to supply sand to deep water off continental margins is that provided by rivers operating at low sea level. We propose an alternative model in which sand is provided by longshore transport to deep water at high sea level north of Fraser Island, SE Queensland. Here we will test the validity of our new model by site studies of sea bottom morphology, composition and dynamics. If the model proves true, we will have: 1) generated an entirely new exploration model for deepwater hydrocarbons, 2) provided new expertise and seabed maps for generating a superior marine naval defence capability.Read moreRead less
Winter temperature and salinity profile measurements in the Southern Ocean using elephant seals as ocean sampling platforms. As a result of the paucity of winter data in the Southern Ocean, sophisticated ocean models such as the GFDL MOM are hampered in their ability to properly represent the complex processes in the Antarctic sea ice zone. Elephant seals forage in the Southern Ocean throughout winter, and traverse the water column between 0 and 800 metres many times each day, providing an oppo ....Winter temperature and salinity profile measurements in the Southern Ocean using elephant seals as ocean sampling platforms. As a result of the paucity of winter data in the Southern Ocean, sophisticated ocean models such as the GFDL MOM are hampered in their ability to properly represent the complex processes in the Antarctic sea ice zone. Elephant seals forage in the Southern Ocean throughout winter, and traverse the water column between 0 and 800 metres many times each day, providing an opportunity to collect profiles of temperature and salinity. The resulting data will contribute to oceanographic studies of water mass formation and frontal variability, including comparisons with historical data and assimilation into a complex ocean model.Read moreRead less
A Dynamical Systems Approach to Mapping Southern Ocean Circulation Pathways. Climate change can be expected to have complex, long-term consequences for Australia's biodiversity, for our agricultural and marine production systems, and for regional communities. The Southern Ocean is a critical driver of global climate, connecting the three major oceanic basins. Using sophisticated mathematics to analyse state-of-the-art global ocean models, this project will create a detailed picture of hitherto i ....A Dynamical Systems Approach to Mapping Southern Ocean Circulation Pathways. Climate change can be expected to have complex, long-term consequences for Australia's biodiversity, for our agricultural and marine production systems, and for regional communities. The Southern Ocean is a critical driver of global climate, connecting the three major oceanic basins. Using sophisticated mathematics to analyse state-of-the-art global ocean models, this project will create a detailed picture of hitherto invisible Southern Ocean circulation 'pathways'. The newly discovered pathways will greatly enhance our understanding of the Southern Ocean circulation, lead to improved coupled climate models, and increase our ability to predict future climate change and threats to marine populations. Read moreRead less
Winter Foraging Locations Of Southern Ocean Predators In Relation To Stochastic Variation In Sea-Ice Extent. Antarctic marine communities are likely to be amongst the first anywhere to show changes due to climate change. A top national priority for Australia is to understand how Antarctic communities will be affected if climate change does occur. As predators reflect changes occurring lower in the food chain, these are an important group to study. This study will be the first to specifically lin ....Winter Foraging Locations Of Southern Ocean Predators In Relation To Stochastic Variation In Sea-Ice Extent. Antarctic marine communities are likely to be amongst the first anywhere to show changes due to climate change. A top national priority for Australia is to understand how Antarctic communities will be affected if climate change does occur. As predators reflect changes occurring lower in the food chain, these are an important group to study. This study will be the first to specifically link ice extent with the habitat use of predators, and quantify how this varies over time. Some work already indicates that there have been community level changes in some predators in the Antarctic due to changes in ice extent, so developing tools to predict the nature and magnitude of these changes are needed. Read moreRead less
The structure and function of cyanobacterial carboxysome multi-protein complexes and their role in carbon sequestration in cyanobacteria. Cyanobacteria are important contributors to global photosynthesis and have evolved unique mechanisms for capturing CO2 from their aquatic environments. Understanding these molecular mechanisms is important for both predicting how cyanobacteria affect carbon fixation at the global scale, and how their genetic specialisation may be used for improving photosynthe ....The structure and function of cyanobacterial carboxysome multi-protein complexes and their role in carbon sequestration in cyanobacteria. Cyanobacteria are important contributors to global photosynthesis and have evolved unique mechanisms for capturing CO2 from their aquatic environments. Understanding these molecular mechanisms is important for both predicting how cyanobacteria affect carbon fixation at the global scale, and how their genetic specialisation may be used for improving photosynthesis in agricultural plants. This project aims to examine one particular aspect of this specialisation, the multi-protein carboxysome complex, where CO2 fixation occurs. Using recent whole-genome information we will take a proteogenomic approach to understanding the structure and function of the carboxysome and how it contributes to the photosynthesis of the cell.Read moreRead less
Benthic Processes and Oceanic Internal Waves. Direct observations will be made of the turbulent motion and sediment re-suspension near the sea bed of the ocean in regions strongly influenced by tides and internal waves. Combined with numerical models, the study will provide new insights into processes that are of fundamental importance to understanding the global dissipation of tidal energy and the role of internal waves in these processes. With observations from the continental slope region of ....Benthic Processes and Oceanic Internal Waves. Direct observations will be made of the turbulent motion and sediment re-suspension near the sea bed of the ocean in regions strongly influenced by tides and internal waves. Combined with numerical models, the study will provide new insights into processes that are of fundamental importance to understanding the global dissipation of tidal energy and the role of internal waves in these processes. With observations from the continental slope region of the Australian North West Shelf, results will also benefit the offshore engineering industry through knowledge of sediment scour and loadings on offshore structures.Read moreRead less
Hydrodynamics of Fringing Reef Systems. Ningaloo Marine Park is part of the National Representative System of Marine Protected Areas. Coral reefs are in a state of decline worldwide, yet Ningaloo Reef has remained in a relatively pristine state. However, its close proximity to land makes it particularly vulnerable to human activities, which are forecast to significantly grow in the near future. Results from this project will advance our ability to predict circulation on reefs and other similar c ....Hydrodynamics of Fringing Reef Systems. Ningaloo Marine Park is part of the National Representative System of Marine Protected Areas. Coral reefs are in a state of decline worldwide, yet Ningaloo Reef has remained in a relatively pristine state. However, its close proximity to land makes it particularly vulnerable to human activities, which are forecast to significantly grow in the near future. Results from this project will advance our ability to predict circulation on reefs and other similar coastal systems. This will provide insight into various ecological processes that are linked to hydrodynamics (e.g. recruitment), and will provide a foundation for conducting risk analysis of processes that threaten the integrity of nearshore environments (e.g. contaminant spills).Read moreRead less
Tidal generation of internal waves and currents. The North West Shelf (NWS) is a region of great significance to Australia, due mainly to the presence of the multi-billion dollar oil and gas industry, but also for fishing and national defense issues. This project will combine laboratory, numerical and field studies to quantify the production of internal waves on the NWS. The results will aid engineering design of offshore pipeline and structures, for both current production facilities and for fu ....Tidal generation of internal waves and currents. The North West Shelf (NWS) is a region of great significance to Australia, due mainly to the presence of the multi-billion dollar oil and gas industry, but also for fishing and national defense issues. This project will combine laboratory, numerical and field studies to quantify the production of internal waves on the NWS. The results will aid engineering design of offshore pipeline and structures, for both current production facilities and for future developments in deeper waters. The project will also provide quantitative knowledge and predictive behavior of the marine environment, allowing the development of earth and marine resources in a sustainable and informed way to protect the marine-based biodiversity.Read moreRead less
How do nano-molecular carboxysome protein structures function in alpha and beta-cyanobacteria and can we use them for novel reaction compartmentalisation? In blue-green algae, protein nano-structures, known as carboxysomes, act as tiny compartments where carbon dioxide (CO2) can be fixed into simple sugars at high efficiency. This important photosynthetic process forms the basis of global primary productivity on this planet, but most land-based CO2 fixation lacks the efficiency seen in blue-gree ....How do nano-molecular carboxysome protein structures function in alpha and beta-cyanobacteria and can we use them for novel reaction compartmentalisation? In blue-green algae, protein nano-structures, known as carboxysomes, act as tiny compartments where carbon dioxide (CO2) can be fixed into simple sugars at high efficiency. This important photosynthetic process forms the basis of global primary productivity on this planet, but most land-based CO2 fixation lacks the efficiency seen in blue-greens. This research aims to determine how the proteins that make up carboxysomes are 3-dimensionally arranged and how these structures function to enhance rates of CO2 fixation. A more thorough understanding of the carboxysome is likely to have potential applications in industrial nano-technology and improve our understanding of oceanic primary productivity.Read moreRead less