Next-generation genomic resources to tackle parasitic diseases of animals. The revolution in genomics provides unprecedented opportunities to tackle destructive parasitic diseases affecting billions of animals worldwide. Through a synergy of leading-edge technologies and a strong partnership with BGI International, this project aims to deliver major conceptual advances in the understanding of parasitism; an unparalleled skills-base in genomics and bioinformatics; innovative new molecular technol ....Next-generation genomic resources to tackle parasitic diseases of animals. The revolution in genomics provides unprecedented opportunities to tackle destructive parasitic diseases affecting billions of animals worldwide. Through a synergy of leading-edge technologies and a strong partnership with BGI International, this project aims to deliver major conceptual advances in the understanding of parasitism; an unparalleled skills-base in genomics and bioinformatics; innovative new molecular technologies; and new treatments and diagnostic tests as biotechnological outcomes. This leap forward in Australia will substantially enhance the global profile of parasitology research, training and employment opportunities for early career scientists, and improve access to international research funding and networks. Read moreRead less
Searching for near-exact protein models. This project aims to develop novel and efficient heuristic-based algorithms leading to near accurate protein tertiary structure models. Knowledge about protein structures is fundamental to our understanding of living systems. The progress on experimental determination of these structures has been extremely limited and remains an open challenge in molecular biology. Computational prediction of protein structures from sequences is emerging as a promising ap ....Searching for near-exact protein models. This project aims to develop novel and efficient heuristic-based algorithms leading to near accurate protein tertiary structure models. Knowledge about protein structures is fundamental to our understanding of living systems. The progress on experimental determination of these structures has been extremely limited and remains an open challenge in molecular biology. Computational prediction of protein structures from sequences is emerging as a promising approach, but its accuracy is far from satisfactory. The software systems developed in this project will be used in structural identification of target proteins in drug design. This will make drug design process more efficient, saving time and cost, potentially saving lives.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE230100473
Funder
Australian Research Council
Funding Amount
$410,154.00
Summary
Effective integration of human and automated analyses for security testing. This DECRA project aims to significantly improve the performance of current state-of-the-art automated security testing approaches, enabling them to discover more security bugs in strict time constraints. The key innovation of the project is its novel way to embrace human element to leverage the ingenuity of the developers. This project will help companies improve the security and reliability of their products, thwarting ....Effective integration of human and automated analyses for security testing. This DECRA project aims to significantly improve the performance of current state-of-the-art automated security testing approaches, enabling them to discover more security bugs in strict time constraints. The key innovation of the project is its novel way to embrace human element to leverage the ingenuity of the developers. This project will help companies improve the security and reliability of their products, thwarting cyberattacks that cost Australian business $29 billion each year. The knowledge from this project will be transferred and integrated into higher education subjects to train the next generations of software developers, who are responsible to build security-critical systems that we all rely on now and in the future.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE240100040
Funder
Australian Research Council
Funding Amount
$442,302.00
Summary
Quality Assurance of Mobile Applications by Effective Testing and Repair. This project aims to create advanced techniques that will enable software engineers to effectively develop quality assured and robust software systems. This project expects to generate new and innovative approaches that automate software testing and repair. The expected outcomes of this project include new knowledge of software engineering, development of an automated and cost-effective testing system with improved coverag ....Quality Assurance of Mobile Applications by Effective Testing and Repair. This project aims to create advanced techniques that will enable software engineers to effectively develop quality assured and robust software systems. This project expects to generate new and innovative approaches that automate software testing and repair. The expected outcomes of this project include new knowledge of software engineering, development of an automated and cost-effective testing system with improved coverage, greater bug detection and repair, and faster testing protocols. This should provide significant benefits to software users by providing reliable and user-friendly systems and to software companies to position Australia as a global leader in software development and technological advancement.Read moreRead less
Mapping the Effectiveness of Automated Software Testing. This project aims to help software engineers build complex software systems in far more reliable and cost-effective ways. It takes an interdisciplinary approach by applying machine learning techniques to automatically test complex software systems. Expected outcomes include a novel methodology for assessing the strengths and weaknesses of test suites generated by automated software testing techniques and the approaches required for generat ....Mapping the Effectiveness of Automated Software Testing. This project aims to help software engineers build complex software systems in far more reliable and cost-effective ways. It takes an interdisciplinary approach by applying machine learning techniques to automatically test complex software systems. Expected outcomes include a novel methodology for assessing the strengths and weaknesses of test suites generated by automated software testing techniques and the approaches required for generating high-quality test cases. Such advances are urgently needed to avoid disasters when deploying software systems in the real world.Read moreRead less
Real-time phylogenetics for food-borne outbreak surveillance. The project aims to introduce, for the first time, real-time evolutionary analysis of agricultural pathogens so that outbreaks affecting crops and the food supply can be managed precisely and rapidly. An expert team will implement a large-scale data analytics framework in user-friendly software that integrates Australian infectious disease genomics data with global data. Underpinning this work are new theory and algorithms that apply ....Real-time phylogenetics for food-borne outbreak surveillance. The project aims to introduce, for the first time, real-time evolutionary analysis of agricultural pathogens so that outbreaks affecting crops and the food supply can be managed precisely and rapidly. An expert team will implement a large-scale data analytics framework in user-friendly software that integrates Australian infectious disease genomics data with global data. Underpinning this work are new theory and algorithms that apply Sequential Monte Carlo to update phylogenetic analyses continuously as new data arrives. Expected outcomes include new knowledge of statistical algorithms for evolutionary analysis, relevant to biological disciplines beyond infectious disease; and enhanced capacity for infectious disease analysis. Read moreRead less
The role of gene isoforms in human brain development. This project aims to investigate how genes vary their products to control human brain development, by creating new methods to study gene activity in individual brain cells. Using these innovative methods, this project expects to generate fundamental new knowledge of how the human brain forms. Expected outcomes of this project include widely applicable techniques, strengthened international (UK) research collaborations and highly trained perso ....The role of gene isoforms in human brain development. This project aims to investigate how genes vary their products to control human brain development, by creating new methods to study gene activity in individual brain cells. Using these innovative methods, this project expects to generate fundamental new knowledge of how the human brain forms. Expected outcomes of this project include widely applicable techniques, strengthened international (UK) research collaborations and highly trained personnel in genomics and neuroscience. This should deliver many benefits, including a better understanding of how the brain forms, training of higher degree by research students, as well as tools and methods of benefit to the academic research and biotechnology sectors.Read moreRead less
Australian Laureate Fellowships - Grant ID: FL190100035
Funder
Australian Research Council
Funding Amount
$3,009,457.00
Summary
Human-centric Model-driven Software Engineering. This project aims to find fundamentally new ways to capture and use human-centric software requirements during model-driven software engineering and verifying that systems meet these requirements. There are major issues with misaligned software applications in terms of accessibility, usability, emotions, personality, age, gender, and culture. This project aims to address these through new conceptual foundations and modelling techniques for their s ....Human-centric Model-driven Software Engineering. This project aims to find fundamentally new ways to capture and use human-centric software requirements during model-driven software engineering and verifying that systems meet these requirements. There are major issues with misaligned software applications in terms of accessibility, usability, emotions, personality, age, gender, and culture. This project aims to address these through new conceptual foundations and modelling techniques for their support during software engineering. The intended outcomes are enhanced theory, models, tools and capability for next-generation software engineering with these critical elements. Significant benefits are expected to include greatly improved software quality, developer productivity and cost savings.Read moreRead less
Formation of boundaries in the developing embryo. This project aims to decipher how the boundaries between the different organs are established in the developing embryo. The project aims to identify the components of the gene regulatory network that controls lateral plate mesoderm formation, develop a mathematical model that can explain how the domains are formed within this region, and validate novel interactions in vivo in zebrafish. The expected outcome of the project is to reveal how the pro ....Formation of boundaries in the developing embryo. This project aims to decipher how the boundaries between the different organs are established in the developing embryo. The project aims to identify the components of the gene regulatory network that controls lateral plate mesoderm formation, develop a mathematical model that can explain how the domains are formed within this region, and validate novel interactions in vivo in zebrafish. The expected outcome of the project is to reveal how the progenitors of our body parts are instructed to be positioned at the right time and at the right place in the embryo. This project should provide significant benefit such as the expansion of Australia's knowledge base and research capability in cross-disciplinary science.Read moreRead less
Values-oriented Defect Fixing for Mobile Software Applications. This project aims to address critical problems with mobile applications that exhibit human values-based defects, by advancing our understanding, detection and fixing of such defects. Many mobile apps do not operate according to the essential values of their human users - e.g. inclusivity, accessibility, privacy, ethical behaviour, due care, emotions, etc - making them ineffective, underused, unfit for purpose or even dangerous. Exp ....Values-oriented Defect Fixing for Mobile Software Applications. This project aims to address critical problems with mobile applications that exhibit human values-based defects, by advancing our understanding, detection and fixing of such defects. Many mobile apps do not operate according to the essential values of their human users - e.g. inclusivity, accessibility, privacy, ethical behaviour, due care, emotions, etc - making them ineffective, underused, unfit for purpose or even dangerous. Expected outcomes include new theories, techniques and prototype tools for developers and end users to detect and help fix values-based defects in mobile apps. Benefits include better, safer mobile apps for people and organisations and improved app developer productivity and competitiveness.Read moreRead less