Evolving rates: foundations for the next generation of molecular clocks. This project aims to investigate the causes and consequences of variation in rate of DNA sequence evolution across three kingdoms of life. Dates estimated from DNA sequences have a wide range of applications, including evolutionary biology, conservation prioritisation and epidemiology. These methods rely on accurate rate estimates, but current models lack information about the biological drivers of rates of genomic change. ....Evolving rates: foundations for the next generation of molecular clocks. This project aims to investigate the causes and consequences of variation in rate of DNA sequence evolution across three kingdoms of life. Dates estimated from DNA sequences have a wide range of applications, including evolutionary biology, conservation prioritisation and epidemiology. These methods rely on accurate rate estimates, but current models lack information about the biological drivers of rates of genomic change. This project will test reliability of current methods, identify potentially misleading estimates of disease origin or conservation priorities, and develop new approaches with empirically-informed models of rate change.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100491
Funder
Australian Research Council
Funding Amount
$418,386.00
Summary
Linking genomic changes to the generation of biodiversity. This project aims to provide a suite of theories, methods and software to enhance our understanding on how the generation of variation at molecular level is linked to the generation of species richness at lineage level. This new approach tests various ways that molecular changes are manifested as patterns of diversification, as revealed by genomic data analysed at the lineage level in phylogenetic studies. Expected outcomes of this proje ....Linking genomic changes to the generation of biodiversity. This project aims to provide a suite of theories, methods and software to enhance our understanding on how the generation of variation at molecular level is linked to the generation of species richness at lineage level. This new approach tests various ways that molecular changes are manifested as patterns of diversification, as revealed by genomic data analysed at the lineage level in phylogenetic studies. Expected outcomes of this project add to a growing body of evolutionary theory and provide practical phylogenetic tools for future analyses. These should benefit Australia by improving our understanding on the formation of Australia’s biodiversity hotspots.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100805
Funder
Australian Research Council
Funding Amount
$382,656.00
Summary
Phylogenetic methods for genome surveillance of microbial pathogens. This project aims to develop phylogenetic approaches to harness the potential evolution of bacterial and virus pathogens data and to improve early detection of infectious outbreaks. Genome surveillance programs consist in routine sequencing of particular organisms to track their evolution over time. Such programs currently exist for important bacterial and virus pathogens. This project expects to develop computational methods t ....Phylogenetic methods for genome surveillance of microbial pathogens. This project aims to develop phylogenetic approaches to harness the potential evolution of bacterial and virus pathogens data and to improve early detection of infectious outbreaks. Genome surveillance programs consist in routine sequencing of particular organisms to track their evolution over time. Such programs currently exist for important bacterial and virus pathogens. This project expects to develop computational methods to improve our understanding of pathogen outbreak emergence and infectious spread using genome data. This project will expand our knowledge base and research capability in the evolution and epidemiology of infectious agents, and aid in the prevention and control strategies of infectious disease benefiting the research priorities of food and health.Read moreRead less
A molecular/morphological view of animal evolution based on marsupials. This project aims to provide high-accuracy methods of evolutionary inference extendable to nearly all other organisms. It aims to research the evolution of animal diversity and calibrate evolutionary timescales on a case study of marsupial mammals, and differentiate between internal and external factors that govern animals’ ability to adapt and diversify. The project will collate a large, open-source three-dimensional catalo ....A molecular/morphological view of animal evolution based on marsupials. This project aims to provide high-accuracy methods of evolutionary inference extendable to nearly all other organisms. It aims to research the evolution of animal diversity and calibrate evolutionary timescales on a case study of marsupial mammals, and differentiate between internal and external factors that govern animals’ ability to adapt and diversify. The project will collate a large, open-source three-dimensional catalogue of the evolving marsupial skeleton, which could provide a detailed and publicly accessible narrative of the evolutionary past and future adaptability of Australian marsupials. The proposed development of methods to quantify the effect of past and present biodiversity crises (e.g. environmental change) is expected to inform longer-term conservation planning.Read moreRead less
Signal manipulation in orb-web spiders. A number of diverse orb-web spiders adorn their webs with conspicuous silk bands called decorations or stabilimenta. Their function remains controversial, but they may act as a visual signal to either attract prey, deter predators or prevent web damage by large non-prey animals. We will test these hypotheses on several Australian orb-web species using field and laboratory experiments. Furthermore, we will investigate the effect of web decorations on specie ....Signal manipulation in orb-web spiders. A number of diverse orb-web spiders adorn their webs with conspicuous silk bands called decorations or stabilimenta. Their function remains controversial, but they may act as a visual signal to either attract prey, deter predators or prevent web damage by large non-prey animals. We will test these hypotheses on several Australian orb-web species using field and laboratory experiments. Furthermore, we will investigate the effect of web decorations on species radiation and hence diversity using molecular techniques to establish phylogenies. This will, at least in part, help resolve this century old debate surrounding web decorations.Read moreRead less
A new class of sodium channel toxin from ant venoms . Ants are diverse and ubiquitous and the ability of certain species to sting is familiar to many of us. Yet we know remarkably little about the chemistry underlying these stings. We recently discovered that the venoms of ants, including common Australian species, harbour a novel and unique class of sodium channel toxins. Building on this discovery, the aim of this project will be to perform an in-depth characterisation of the effects of these ....A new class of sodium channel toxin from ant venoms . Ants are diverse and ubiquitous and the ability of certain species to sting is familiar to many of us. Yet we know remarkably little about the chemistry underlying these stings. We recently discovered that the venoms of ants, including common Australian species, harbour a novel and unique class of sodium channel toxins. Building on this discovery, the aim of this project will be to perform an in-depth characterisation of the effects of these toxins on sodium channels and to uncover the diversity and breadth of this toxin class in ant venoms. The outcome of this project will be novel insights into the chemistry of ant venoms and new insights into sodium channel function.Read moreRead less
Distinguishing among patterns of extinction and speciation through geological and climatic change: a molecular modelling approach. This research will enhance our understanding of the ancient origins of Australia's unique floral heritage. By developing new molecular modelling methods, it will strengthen Australia's position at the cutting edge of evolutionary phylogenetics. When Australia separated from Gondwana by continental drift 32 million years ago, the changed ocean circulation patterns tri ....Distinguishing among patterns of extinction and speciation through geological and climatic change: a molecular modelling approach. This research will enhance our understanding of the ancient origins of Australia's unique floral heritage. By developing new molecular modelling methods, it will strengthen Australia's position at the cutting edge of evolutionary phylogenetics. When Australia separated from Gondwana by continental drift 32 million years ago, the changed ocean circulation patterns triggered global climate change. The result was turnover of biota world-wide and dramatic changes within Australia. We will develop new insights into the rate and mode of these changes that will have international significance. Understanding the long-term turnover of flora from previous global climate changes will help to predict the impact of current and future climate change.Read moreRead less
The nature and consequences of environmentally-generated phenotypic variation in natural populations. The ambient environment can generate both heritable and non-heritable variation in individual traits, but the role of such variation in evolution is poorly understood. This project will use a powerful model organism, the Australian neriid flies, to elucidate the evolutionary implications of environmentally-generated variation.
Sociality and a sense of smell: receptor organ evolution in ants. This research provides novel insights into social recognition in insects by capitalising on a new technique to investigate the role of chemosensory detection of contact pheromones. The primary impact will be to ensure that Australia maintains its high research profile in this field, and by contributing to research training through supervising and mentoring research students. Finally, our research will contribute to our understand ....Sociality and a sense of smell: receptor organ evolution in ants. This research provides novel insights into social recognition in insects by capitalising on a new technique to investigate the role of chemosensory detection of contact pheromones. The primary impact will be to ensure that Australia maintains its high research profile in this field, and by contributing to research training through supervising and mentoring research students. Finally, our research will contribute to our understanding of the 'success' of major trans-global ant pest species, information that could prove useful in management strategies.Read moreRead less
Evolution in action or the demise of iconic Australian flora? The project aims to investigate the evolutionary history and conservation status of a group of closely related Grevillea species, in the light of increasing pressure from landscape modification. This project will incorporate leading methodologies for massively parallel sequencing, pollinator preference and breeding capacity in order to detect the patterns and processes underpinning divergence in widely distributed species. A phylogene ....Evolution in action or the demise of iconic Australian flora? The project aims to investigate the evolutionary history and conservation status of a group of closely related Grevillea species, in the light of increasing pressure from landscape modification. This project will incorporate leading methodologies for massively parallel sequencing, pollinator preference and breeding capacity in order to detect the patterns and processes underpinning divergence in widely distributed species. A phylogenetic framework will provide the evolutionary relationships among taxa. This project is expected to inform requirements for long-term species persistence and, for threatened species within the group, guide the decision making of biodiversity managers as to what actions are required and where best to invest limited funds.Read moreRead less