Statistical methods for detection of non-coding RNAs in eukaryote genomes. Understanding how eukaryotic cells work is a major goal of 21st century biology. A crucial step will be to catalogue the functional components of eukaryotic genomes. Australian researchers must be involved in this process at an early stage, in order to maximise commercial opportunities, attract quality researchers and position ourselves for further advances. This project will make major contributions to international effo ....Statistical methods for detection of non-coding RNAs in eukaryote genomes. Understanding how eukaryotic cells work is a major goal of 21st century biology. A crucial step will be to catalogue the functional components of eukaryotic genomes. Australian researchers must be involved in this process at an early stage, in order to maximise commercial opportunities, attract quality researchers and position ourselves for further advances. This project will make major contributions to international efforts in this area, via the development of statistical methods for segmenting genomes, classification of those segments, and study of the resulting classes. In the long term, enhanced understanding of eukaryotic cells will lead to breakthroughs in biology, and to medical, pharmaceutical, agricultural and scientific advances.Read moreRead less
ARC Centre for Complex Dynamic Systems & Control. Complex dynamic systems are an inescapable feature of the world we live in. Modelling, analysing and optimizing complex behaviour is crucial for environment, process industry, biomedical, energy distribution, transportation and other applications. The Centre for Complex Dynamic Systems and Control will become an international authority in the analysis, design and optimization of complex dynamic systems, pursuing both outstanding fundamental and c ....ARC Centre for Complex Dynamic Systems & Control. Complex dynamic systems are an inescapable feature of the world we live in. Modelling, analysing and optimizing complex behaviour is crucial for environment, process industry, biomedical, energy distribution, transportation and other applications. The Centre for Complex Dynamic Systems and Control will become an international authority in the analysis, design and optimization of complex dynamic systems, pursuing both outstanding fundamental and cutting edge applied research outcomes. These outcomes will be of specific benefit to partner organizations including minerals, process, metal forming, and automotive industries.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0347727
Funder
Australian Research Council
Funding Amount
$400,000.00
Summary
Computational infrastructure for high-throughput genome bioinformatics. We propose a high-performance computing and web facility for genome bioinformatics. It will provide a common software development environment in support of molecular biosciences, systems biology and complex systems modelling at the Institute for Molecular Bioscience at University of Queensland, and at Queensland University of Technology. The platform will support Australia's first genome-scale bioinformatics research website ....Computational infrastructure for high-throughput genome bioinformatics. We propose a high-performance computing and web facility for genome bioinformatics. It will provide a common software development environment in support of molecular biosciences, systems biology and complex systems modelling at the Institute for Molecular Bioscience at University of Queensland, and at Queensland University of Technology. The platform will support Australia's first genome-scale bioinformatics research website, with unique software and mirrors of the IBM Biological Pattern Discovery, UC San Diego MEME/MetaMEME/MAST, and NGI comparative genomics websites. Australian/NZ researchers will access the facility at no cost for high-throughput use of unique software, website mirrors and other important tools for genome bioinformatics.Read moreRead less
Classification of Microarray Gene-Expression Data. The broad aim is to provide statistical methodology for the classification of microarray gene-expression data. Microarrays are part of a new biotechnology that allows the monitoring of expression levels for thousands of genes simultaneously. The explosion in microarrays has produced massive quantities of data that require new statistical techniques for analysis in order to exploit their enormous scientific potential. One of the main uses of ....Classification of Microarray Gene-Expression Data. The broad aim is to provide statistical methodology for the classification of microarray gene-expression data. Microarrays are part of a new biotechnology that allows the monitoring of expression levels for thousands of genes simultaneously. The explosion in microarrays has produced massive quantities of data that require new statistical techniques for analysis in order to exploit their enormous scientific potential. One of the main uses of the methodology to be developed is to expedite the discovery of new subclasses of diseases. Another is to provide prediction rules for the diagnosis and treatment of diseases.Read moreRead less
High Resolution EPR Spectroscopy - A Tool for Determining Electronic and Geometric Structure of Metalloenzymes. High resolution orientation selective pulsed EPR and END(T)OR in conjunction with computer simulation (XSophe) and computational chemistry will allow the determination of the electronic and geometric structure (distance and orientation of nuclei surrounding the metal ion(s)) of multiple redox centres in DMSOR, DorC and DMSDH to be determined. In addition pulsed ELDOR in conjunction wi ....High Resolution EPR Spectroscopy - A Tool for Determining Electronic and Geometric Structure of Metalloenzymes. High resolution orientation selective pulsed EPR and END(T)OR in conjunction with computer simulation (XSophe) and computational chemistry will allow the determination of the electronic and geometric structure (distance and orientation of nuclei surrounding the metal ion(s)) of multiple redox centres in DMSOR, DorC and DMSDH to be determined. In addition pulsed ELDOR in conjunction with molecular modelling will enable the mapping (distance and orientation) of redox centres in complex multicentered metalloproteins (DMSDH and DorC) and in protein-protein complexes (DMSOR-DorC) providing information on the pathway of electron transfer and hence the role of the pyranopterins.Read moreRead less
Variational methods in partial differential equations. Research in partial differential equations is a very active area of modern mathematics linking nonlinear functional analysis, calculus of variations and differential geometry to applied sciences. This project will enable Australia-based researchers to participate in the forefront of mathematical research with leading international mathematicians by establishing new collaborations, strengthening on-going collaborations and providing internat ....Variational methods in partial differential equations. Research in partial differential equations is a very active area of modern mathematics linking nonlinear functional analysis, calculus of variations and differential geometry to applied sciences. This project will enable Australia-based researchers to participate in the forefront of mathematical research with leading international mathematicians by establishing new collaborations, strengthening on-going collaborations and providing international research experience for early career researchers. As a result, this proposal will enhance Australia's distinguished reputation in analysis and further link the UQ group with a number of mathematical institutes in USA and China.Read moreRead less
New computational methods study on protein function prediction. The proposed research aims to develop new computational methods to solve one of the most important bioinformatics problems in the post-genome era. This project will expand the knowledge on protein sequence-structure-function relationship, provide new analysis methods and predict the functions of novel proteins. This project will strengthen Australia's reputation for research excellence.
Geometric partial differential systems and their applications. This proposal addresses questions central to the understanding of nonlinear partial differential systems from classical, quantum field theory and liquid crystals. Applications to physical problems such as the Yang-Mills flow, Faddeev's model and liquid crystal systems are of great interest and importance in the broader scientific community. The project will yield internationally significant results in theoretical mathematics, with ....Geometric partial differential systems and their applications. This proposal addresses questions central to the understanding of nonlinear partial differential systems from classical, quantum field theory and liquid crystals. Applications to physical problems such as the Yang-Mills flow, Faddeev's model and liquid crystal systems are of great interest and importance in the broader scientific community. The project will yield internationally significant results in theoretical mathematics, with applications in physics and and other sciences. Specialist training will be provided for Australia's next generation of mathematicians. This project will enable Australian researchers to stay at the forefront of research in this area, strengthening links with a number of world-leading mathematicians.Read moreRead less
Geometric variational problems and nonlinear partial differential systems. We will investigate several important problems on non-linear partial differential systems, bridging analysis, differential geometry and mathematical physics. Harmonic maps are the prototype of maps minimizing the Dirichlet energy. The liquid crystal configuration generalizes the harmonic map with values into two dimensional spheres. The Yang-Mills equations originated from particle physics. We will make fundamental contri ....Geometric variational problems and nonlinear partial differential systems. We will investigate several important problems on non-linear partial differential systems, bridging analysis, differential geometry and mathematical physics. Harmonic maps are the prototype of maps minimizing the Dirichlet energy. The liquid crystal configuration generalizes the harmonic map with values into two dimensional spheres. The Yang-Mills equations originated from particle physics. We will make fundamental contributions to these topics: Regularity problem and energy minimality of weakly harmonic maps, Weak solutions of the liquid crystal equilibrium system, Yang-Mills heat flow and singular Yang-Mills connections.
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Mutagenesis and combinatorial algorithms for sequencing problematic genomic regions. This project will develop a remarkable and original approach to DNA sequencing with potential to radically improve the speed, accuracy and effectiveness of existing sequencing technologies. It is especially useful for dealing with difficult-to-sequence genomic regions and has implications for all sequencing projects, including completion of the Human Genome Project. The approach involves generating, and wholly o ....Mutagenesis and combinatorial algorithms for sequencing problematic genomic regions. This project will develop a remarkable and original approach to DNA sequencing with potential to radically improve the speed, accuracy and effectiveness of existing sequencing technologies. It is especially useful for dealing with difficult-to-sequence genomic regions and has implications for all sequencing projects, including completion of the Human Genome Project. The approach involves generating, and wholly or partially sequencing, mutated copies of problematic regions of the target genome. Advanced combinatorial algorithms are then used to form highly probable alignments between strings and determine the unknown sequence. The approach has additional benefits in detecting single-nucleotide polymorphisms and sequencing errors.Read moreRead less