My enemy’s enemy is my friend: The genetics of major plant pathogen killers. Fungi are devastating agents of crop diseases. These plant pathogens, in turn, are often parasitized by other fungi in the field. The project will focus on such interactions between powdery mildews, important pathogens of many crops and wild plants, and their common fungal parasites (Ampelomyces spp.) that have already been utilised as
biocontrol agents in crop protection. Genetic and genomic tools will be used to deter ....My enemy’s enemy is my friend: The genetics of major plant pathogen killers. Fungi are devastating agents of crop diseases. These plant pathogens, in turn, are often parasitized by other fungi in the field. The project will focus on such interactions between powdery mildews, important pathogens of many crops and wild plants, and their common fungal parasites (Ampelomyces spp.) that have already been utilised as
biocontrol agents in crop protection. Genetic and genomic tools will be used to determine if these parasites evolved by switching host from plants to plant pathogens. The project has the potential to make a ground-breaking discovery in this field, and also establish the starting point for new innovative methods to protect a wide diversity
of crops using these fungi or specific compounds derived from them.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE170100151
Funder
Australian Research Council
Funding Amount
$372,000.00
Summary
Enhancing resistance to wheat stripe rust disease. This project aims to investigate why wheat succumbs to stripe rust fungus, a grave threat to global wheat production. Wheat is the primary agricultural and revenue crop of Australia, cultivated since early European settlement. Severe disease epidemics arise when the fast evolving rust pathogen breaks down host plant genetic resistance. This project will investigate the molecular mechanisms of host-pathogen recognition and the consequences of pat ....Enhancing resistance to wheat stripe rust disease. This project aims to investigate why wheat succumbs to stripe rust fungus, a grave threat to global wheat production. Wheat is the primary agricultural and revenue crop of Australia, cultivated since early European settlement. Severe disease epidemics arise when the fast evolving rust pathogen breaks down host plant genetic resistance. This project will investigate the molecular mechanisms of host-pathogen recognition and the consequences of pathogen variation to determine the causes of resistance breakdown. The expected outcome is robust rust-resistant wheat cultivars to maintain global food security.Read moreRead less
Deciphering the role of microRNAs during pathogen attack: new concepts for disease resistance in plants. Small non-coding RNAs called ‘microRNAs’ regulate diverse pathways in plants including plant defence against pathogens. This project will investigate the roles of plant microRNAs in response to four economically important viruses and compare these to a bacterial and a fungal pathogen. The aim is to dissect the underlying molecular mechanism of microRNA-based gene regulation during pathogen in ....Deciphering the role of microRNAs during pathogen attack: new concepts for disease resistance in plants. Small non-coding RNAs called ‘microRNAs’ regulate diverse pathways in plants including plant defence against pathogens. This project will investigate the roles of plant microRNAs in response to four economically important viruses and compare these to a bacterial and a fungal pathogen. The aim is to dissect the underlying molecular mechanism of microRNA-based gene regulation during pathogen infection and specifically identify common microRNAs which have evident impact during virus attack. This study is crucial due to its focus on virus diseases that cause severe damage to many crop plants; a global issue with strong implications for food security. This project is expected to provide basic new concepts for disease resistance in plants.Read moreRead less
A novel role for phytochrome in dormancy release inhibition. Seed dormancy contributes to the persistence of weeds in agriculture by enabling seeds to remain viable in the soil for many years, and is a major reason why annual ryegrass (Lolium rigidum) has become the most economically damaging weed in Australian agriculture. Recently we discovered a new way to control dormancy release and germination in these seeds. This project to identify the changes occurring within the seeds during dormancy r ....A novel role for phytochrome in dormancy release inhibition. Seed dormancy contributes to the persistence of weeds in agriculture by enabling seeds to remain viable in the soil for many years, and is a major reason why annual ryegrass (Lolium rigidum) has become the most economically damaging weed in Australian agriculture. Recently we discovered a new way to control dormancy release and germination in these seeds. This project to identify the changes occurring within the seeds during dormancy release will underpin our efforts to manipulate emergence timing in order to improve the efficacy of current weed control practices and contribute to sustainable farming systems.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0347105
Funder
Australian Research Council
Funding Amount
$100,000.00
Summary
Algal Identification - Culturing Facility of North Queensland (NQAIF). NQAIF, a regionally integrated tropical algal identification - culturing facility; the first of its kind in the world, will establish and house tropical phytoplankton cultures to enable new and enhance existing experimental research on marine and freshwater tropical phytoplankton under controlled environmental conditions. The facility will establish world-class expertise in North Queensland and create the knowledge base for t ....Algal Identification - Culturing Facility of North Queensland (NQAIF). NQAIF, a regionally integrated tropical algal identification - culturing facility; the first of its kind in the world, will establish and house tropical phytoplankton cultures to enable new and enhance existing experimental research on marine and freshwater tropical phytoplankton under controlled environmental conditions. The facility will establish world-class expertise in North Queensland and create the knowledge base for the Australasian Pacific regions. NQAIF will significantly boost high quality national and international collaborative links in the research areas of tropical water quality; phytoplankton toxicity; the search for novel bioactive compounds; sustainable tropical aquaculture and coral bleaching.Read moreRead less
A systems approach to dissect the pathogenicity and host specificity of the Fusarium wilt pathogen, Fusarium oxysporum. The pathogenic fungus Fusarium oxysporum causes wilt disease in many plant species, including many that are important for Australian agriculture. Developing environmentally friendly disease protection strategies against this pathogen requires a clear understanding of infection strategies used by the fungus to invade its host. This project, along with a parallel project in host ....A systems approach to dissect the pathogenicity and host specificity of the Fusarium wilt pathogen, Fusarium oxysporum. The pathogenic fungus Fusarium oxysporum causes wilt disease in many plant species, including many that are important for Australian agriculture. Developing environmentally friendly disease protection strategies against this pathogen requires a clear understanding of infection strategies used by the fungus to invade its host. This project, along with a parallel project in host resistance mechanisms, will provide the basis for development of a world leading platform in mechanisms of fungal pathogenicity and virulence and plant disease resistance/susceptibility. Application of the knowledge gained in this project to other host-pathogen interactions will thereby provide opportunities for improved crop protection and biosecurity.Read moreRead less
Seafood safety: high throughput diagnostics for ciguatoxin risk assessment. This project aims to develop a novel, high throughput platform for rapidly assessing ciguatoxins. Species of the marine microalgae Gambierdiscus produce ciguatoxins, which accumulate in fish through marine food chains to cause the often debilitating human illness called ciguatera fish poisoning. Ciiguatera fish poisoning is a growing and substantial risk for the $2.2 billion Australian commercial fishing industry. This s ....Seafood safety: high throughput diagnostics for ciguatoxin risk assessment. This project aims to develop a novel, high throughput platform for rapidly assessing ciguatoxins. Species of the marine microalgae Gambierdiscus produce ciguatoxins, which accumulate in fish through marine food chains to cause the often debilitating human illness called ciguatera fish poisoning. Ciiguatera fish poisoning is a growing and substantial risk for the $2.2 billion Australian commercial fishing industry. This serious illness is increasingly impacting more southerly areas of Australia due to environmental changes. The outcomes of this project include new knowledge of the risk of ciguatoxins at Australian 'hot spot' sites, extensively field tested methods for detecting Gambierdiscus and ciguatoxins in situ and key data to inform policy to safeguard the seafood industry and consumers.
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Genome dynamics following plastid endosymbiosis. Plastid endosymbiosis events (enslavement of an algal cell inside of a host cell to form a plastid) are difficult to pinpoint because the genomic data required for a broad array of species are rarely available. Furthermore, the classical method used to infer endosymbiotic gene transfers is being criticised. This project will elucidate the origin of chlorarachniophyte and dinoflagellate plastids and characterise the genome dynamics following endosy ....Genome dynamics following plastid endosymbiosis. Plastid endosymbiosis events (enslavement of an algal cell inside of a host cell to form a plastid) are difficult to pinpoint because the genomic data required for a broad array of species are rarely available. Furthermore, the classical method used to infer endosymbiotic gene transfers is being criticised. This project will elucidate the origin of chlorarachniophyte and dinoflagellate plastids and characterise the genome dynamics following endosymbiosis. It uses densely sampled genome data obtained with high-throughput sequencing technologies. Simulation studies will be used to evaluate methods for inferring endosymbiotic gene transfer and alignment-free methods will be used to improve phylogenomic pipelines.Read moreRead less
Regulation of ion homeostasis by two-component signalling elements. Dryland salinity is continuously claiming Australian lands and is a serious threat to our agricultural industry, native flora and fauna, and infrastructure. Attempting to feed an increasing population whilst agricultural land is disappearing, places an ever-increasing burden on our remaining land. While there is no simple solution to this problem, understanding how plants regulate cellular ion concentrations will help to generat ....Regulation of ion homeostasis by two-component signalling elements. Dryland salinity is continuously claiming Australian lands and is a serious threat to our agricultural industry, native flora and fauna, and infrastructure. Attempting to feed an increasing population whilst agricultural land is disappearing, places an ever-increasing burden on our remaining land. While there is no simple solution to this problem, understanding how plants regulate cellular ion concentrations will help to generate plants that are suitable for restoration of damaged lands or crop plants that are more tolerant to saline soils. Furthermore, knowledge acquired from the proposed project will also be useful for generating healthier crop plants with enhanced levels of ions essential for the human diet. Read moreRead less
The other half of the G-protein story: Functional analysis of the plant G-protein gamma subunits. It is now established that G-proteins are involved in the transduction of a number of important processes in plants (Cell division, stomata control, defence, light perception, etc). Nevertheless the data accumulated to date is based on the study of one of the two subunits (alpha) of the G-proteins. Almost nothing is known about the role of the second (and independent) subunit: beta-gamma. We will st ....The other half of the G-protein story: Functional analysis of the plant G-protein gamma subunits. It is now established that G-proteins are involved in the transduction of a number of important processes in plants (Cell division, stomata control, defence, light perception, etc). Nevertheless the data accumulated to date is based on the study of one of the two subunits (alpha) of the G-proteins. Almost nothing is known about the role of the second (and independent) subunit: beta-gamma. We will study for the first time the role of the beta-gamma subunit in plants. We will use a comprehensive approach combining biochemical, physiological, phenotypic, genomic and proteomic studies.Read moreRead less