Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to ....Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to handle the huge quantities of genetic data and the complexity of evolution itself. An important expected outcome of this project will be the development and release of freely-available software that incorporates these new methods. This project expects to benefit scientists who need to infer phylogenies from genomic data. Read moreRead less
Dynamic evolution of mutation rates: causes and impacts on genomic analysis. This project aims to illuminate the role of variation in mutation rate in driving evolutionary change. Mutation rate is a core parameter in evolutionary analyses in essential applications including epidemiology, conservation and medicine, yet remains a “black box” given arbitrary universal values. This project will take a whole-of-biodiversity approach to understanding the forces shaping mutation rate, impact on evoluti ....Dynamic evolution of mutation rates: causes and impacts on genomic analysis. This project aims to illuminate the role of variation in mutation rate in driving evolutionary change. Mutation rate is a core parameter in evolutionary analyses in essential applications including epidemiology, conservation and medicine, yet remains a “black box” given arbitrary universal values. This project will take a whole-of-biodiversity approach to understanding the forces shaping mutation rate, impact on evolution of biodiversity and effect on accuracy and precision of phylogenetic analyses. Using Australian case studies, the expected outcome of this project will be a greater understanding variation in mutation rate between species, providing significant benefits in developing more sophisticated and reliable phylogenetic analyses.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE230100003
Funder
Australian Research Council
Funding Amount
$387,373.00
Summary
The evolution of venom and its role in shaping biodiversity. This project aims to study how venom, nature's most powerful weapon, evolves and shapes biodiversity. Using the iconic Australian and New Guinean venomous snakes as a model, this project expects to develop a novel approach to profile venom composition from museum specimens, test competing hypotheses on the evolution of venoms, and test for the association between the evolution of venoms and the evolution of diversity in species richnes ....The evolution of venom and its role in shaping biodiversity. This project aims to study how venom, nature's most powerful weapon, evolves and shapes biodiversity. Using the iconic Australian and New Guinean venomous snakes as a model, this project expects to develop a novel approach to profile venom composition from museum specimens, test competing hypotheses on the evolution of venoms, and test for the association between the evolution of venoms and the evolution of diversity in species richness and morphology. Expected outcomes include the largest venom database for any animal group and a better understanding of how venoms evolve and what role they play in earth’s biodiversity. The generated venom data has potential to be used in future studies to aid in the development of anti-venoms and drugs.Read moreRead less
Secure and Resistant Blockchain for Financial and Business Applications. The aim of this project is to develop a practical secure blockchain technology for the booming applications in finance and business. This project expects to address the leading security threats to the current blockchain applications. The expected outcome is an executable secure and resistant blockchain prototype through the integration of the latest developed and customized techniques. The success of the project will dramat ....Secure and Resistant Blockchain for Financial and Business Applications. The aim of this project is to develop a practical secure blockchain technology for the booming applications in finance and business. This project expects to address the leading security threats to the current blockchain applications. The expected outcome is an executable secure and resistant blockchain prototype through the integration of the latest developed and customized techniques. The success of the project will dramatically benefit Australian people and government, especially for the Australian ICT industry for commercializing the research outputs. Read moreRead less
Integrating theory and data to model evolution under a changing climate. This project aims to develop an innovative approach that integrates diverse data sources, from genetic sequences to geographic distributions, to improve inference of evolutionary dynamics. This will provide a powerful and efficient new method for understanding species’ responses to climate change, demonstrated by inferring past, current and future climate adaptability in a diverse and ecologically important Australian plant ....Integrating theory and data to model evolution under a changing climate. This project aims to develop an innovative approach that integrates diverse data sources, from genetic sequences to geographic distributions, to improve inference of evolutionary dynamics. This will provide a powerful and efficient new method for understanding species’ responses to climate change, demonstrated by inferring past, current and future climate adaptability in a diverse and ecologically important Australian plant family. Expected outcomes include enrichment of evolutionary theory and software tools to assess species' vulnerability to climate change. These outcomes will bring significant benefits to improve knowledge and protection of Australian biota and maximise returns on Australia's investment in biodiversity databases.Read moreRead less
Biological diversification across Australia in space and time. This project aims to address fundamental questions about the diversification of Australian species and to have practical and impactful outcomes. It will leverage previous ARC funded research on the phylogenomics of Australian reptiles and amphibians and apply sophisticated analytical tools for quantifying and evaluating biological diversity in multiple dimensions and in a phylogenetic context. The expected outcomes include a publicly ....Biological diversification across Australia in space and time. This project aims to address fundamental questions about the diversification of Australian species and to have practical and impactful outcomes. It will leverage previous ARC funded research on the phylogenomics of Australian reptiles and amphibians and apply sophisticated analytical tools for quantifying and evaluating biological diversity in multiple dimensions and in a phylogenetic context. The expected outcomes include a publicly accessible comprehensive database that will be integrated with the Atlas of Living Australia and rigorous testing of a series of hypotheses concerning how old and recent Australian groups evolved in response to biotic invasions and climate change. Read moreRead less
Evolving rates: foundations for the next generation of molecular clocks. This project aims to investigate the causes and consequences of variation in rate of DNA sequence evolution across three kingdoms of life. Dates estimated from DNA sequences have a wide range of applications, including evolutionary biology, conservation prioritisation and epidemiology. These methods rely on accurate rate estimates, but current models lack information about the biological drivers of rates of genomic change. ....Evolving rates: foundations for the next generation of molecular clocks. This project aims to investigate the causes and consequences of variation in rate of DNA sequence evolution across three kingdoms of life. Dates estimated from DNA sequences have a wide range of applications, including evolutionary biology, conservation prioritisation and epidemiology. These methods rely on accurate rate estimates, but current models lack information about the biological drivers of rates of genomic change. This project will test reliability of current methods, identify potentially misleading estimates of disease origin or conservation priorities, and develop new approaches with empirically-informed models of rate change.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100491
Funder
Australian Research Council
Funding Amount
$418,386.00
Summary
Linking genomic changes to the generation of biodiversity. This project aims to provide a suite of theories, methods and software to enhance our understanding on how the generation of variation at molecular level is linked to the generation of species richness at lineage level. This new approach tests various ways that molecular changes are manifested as patterns of diversification, as revealed by genomic data analysed at the lineage level in phylogenetic studies. Expected outcomes of this proje ....Linking genomic changes to the generation of biodiversity. This project aims to provide a suite of theories, methods and software to enhance our understanding on how the generation of variation at molecular level is linked to the generation of species richness at lineage level. This new approach tests various ways that molecular changes are manifested as patterns of diversification, as revealed by genomic data analysed at the lineage level in phylogenetic studies. Expected outcomes of this project add to a growing body of evolutionary theory and provide practical phylogenetic tools for future analyses. These should benefit Australia by improving our understanding on the formation of Australia’s biodiversity hotspots.Read moreRead less
Evolutionary history and conservation of an iconic Australian plant group. This project aims to strengthen biodiversity conservation using evolutionary biology. By using new DNA sequencing technologies the project aims to reconstruct the evolutionary history of the diverse and ecologically important plant family Proteaceae. This will be used to discover how past environmental changes have produced the biodiversity we see today, and forecast likely future changes to biodiversity under expected r ....Evolutionary history and conservation of an iconic Australian plant group. This project aims to strengthen biodiversity conservation using evolutionary biology. By using new DNA sequencing technologies the project aims to reconstruct the evolutionary history of the diverse and ecologically important plant family Proteaceae. This will be used to discover how past environmental changes have produced the biodiversity we see today, and forecast likely future changes to biodiversity under expected rapid environmental change. The key outcome will be a new methodology for a predictive, forward-looking conservation science that accounts explicitly for the dynamic, evolving nature of biodiversity. The key benefit will be a more robust scientific basis for strategic allocation of limited conservation resources.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE210100107
Funder
Australian Research Council
Funding Amount
$672,000.00
Summary
The next generation fast radio burst detector for Australia. This project intends to provide a next-generation fast radio burst detector for the Australian Square Kilometre Array Pathfinder. The project expects to both transform our understanding of fast radio bursts, enigmatic flashes of radio waves of unknown origin, but also use the bursts as tools to study the cosmic web of matter that resides in intergalactic space. To do so, the project aims to deliver a more sensitive detection system ca ....The next generation fast radio burst detector for Australia. This project intends to provide a next-generation fast radio burst detector for the Australian Square Kilometre Array Pathfinder. The project expects to both transform our understanding of fast radio bursts, enigmatic flashes of radio waves of unknown origin, but also use the bursts as tools to study the cosmic web of matter that resides in intergalactic space. To do so, the project aims to deliver a more sensitive detection system capable of localising a large sample of fast radio bursts to greater distances, found commensal to other observations. This should provide significant benefit, including the resolutions to key open astrophysical questions and improved scientific outcomes for transient searches with the Square Kilometre Array.Read moreRead less