Structure and informatics of the genetic code. Recent advances in biotechnology have seen its emergence as a highly
quantitative, numerically-based discipline. To exploit the available
data to the full will require, alongside computing power, new
analytical techniques. This project aims to develop such techniques,
by handling the systematics of the genetic code with methods derived
from theoretical physics and chemistry. Expected outcomes include a
dynamical (quantum field theory) model ....Structure and informatics of the genetic code. Recent advances in biotechnology have seen its emergence as a highly
quantitative, numerically-based discipline. To exploit the available
data to the full will require, alongside computing power, new
analytical techniques. This project aims to develop such techniques,
by handling the systematics of the genetic code with methods derived
from theoretical physics and chemistry. Expected outcomes include a
dynamical (quantum field theory) model of phylogenetic branching,
analyses of nucleic acid structure and content (spin chain models of
RNA binding and of DNA open reading frames), and insights into the
origin of the code itself (via numerical codon similarity measures).
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Markov invariants and phylogenetic tree reconstruction. The project will assist Australia to progress as an innovator in the production phylogenetic tree reconstruction techniques.
Identifying species is a difficult task with environmental, social and economic benefits to Australia. DNA evidence and phylogenetic methods clearly achieve this task. Conservation of rare species depends upon identification and hence robust phylogenetic analysis. Phylogenetically identifying fish species has econom ....Markov invariants and phylogenetic tree reconstruction. The project will assist Australia to progress as an innovator in the production phylogenetic tree reconstruction techniques.
Identifying species is a difficult task with environmental, social and economic benefits to Australia. DNA evidence and phylogenetic methods clearly achieve this task. Conservation of rare species depends upon identification and hence robust phylogenetic analysis. Phylogenetically identifying fish species has economic importance as different fish species are all managed separately, having different catch limits, catch areas and market values. Using effective phylogenetic methods, epidemiologists can track the spread of a disease through a population. Read moreRead less
Transient Astronomical Sources at Radio Frequencies. Australian radio telescopes are among the finest and most modern anywhere in the world, and they are the only such instruments that can study the Southern Hemisphere sky. The University of Tasmania operates two radio observatories, at Hobart, Tas, and Ceduna, SA, that are used together to detect astronomical pulses arriving simultaneously at the two sites. The techniques of interference suppression, dispersion searching, fast sampling over b ....Transient Astronomical Sources at Radio Frequencies. Australian radio telescopes are among the finest and most modern anywhere in the world, and they are the only such instruments that can study the Southern Hemisphere sky. The University of Tasmania operates two radio observatories, at Hobart, Tas, and Ceduna, SA, that are used together to detect astronomical pulses arriving simultaneously at the two sites. The techniques of interference suppression, dispersion searching, fast sampling over broad bandwidths, and high speed data transmission between Ceduna and Hobart that will be implemented in this project have direct applications in science and the communications industry. The students who will develop this equipment will carry over their expertise to the private sector.Read moreRead less
Ecosystem level impacts of climate change on a temperate grassland. The sustainable use of temperate native pastures is important economically because of grazing and for biodiversity since they are home to many threatened plants. Native pasture sustainability depends on maintaining species diversity and vegetation productivity, both of which have been shown to change in response to climate change. The aims of this project are to elucidate what impact these changes have on the ecosystem propertie ....Ecosystem level impacts of climate change on a temperate grassland. The sustainable use of temperate native pastures is important economically because of grazing and for biodiversity since they are home to many threatened plants. Native pasture sustainability depends on maintaining species diversity and vegetation productivity, both of which have been shown to change in response to climate change. The aims of this project are to elucidate what impact these changes have on the ecosystem properties of a native pasture. This is important, as it will allow likely problems caused by global climate change to be predicted by increasing the understanding of the underlying mechanisms as well as improving the management of grasslands in an environmentally sustainable way. Read moreRead less
How plants open up: revealing the evolution of stomatal opening mechanisms. This project aims to identify novel and conserved mechanisms that drive the opening of stomata – plant pores that enable CO2 acquisition for photosynthesis. Stomatal movements strongly affect plant productivity and water use efficiency and have profoundly influenced the earth’s climate and terrestrial ecology. This project will address critical gaps in our understanding of how plants open stomata in response to their env ....How plants open up: revealing the evolution of stomatal opening mechanisms. This project aims to identify novel and conserved mechanisms that drive the opening of stomata – plant pores that enable CO2 acquisition for photosynthesis. Stomatal movements strongly affect plant productivity and water use efficiency and have profoundly influenced the earth’s climate and terrestrial ecology. This project will address critical gaps in our understanding of how plants open stomata in response to their environment and the evolutionary history of the genes controlling this fundamental process. A major expected outcome is knowledge of the diversity of stomatal opening pathways, which should ultimately lead to improved predictions of plant responses to environmental change and assist future targeted modification of plant growth.Read moreRead less
Impacts of climate change on sustainability of temperate native pasture: an experiment. The sustainable use of temperate native pastures is important economically because of grazing and for biodiversity since they are home to many threatened plants. Native pasture sustainability depends on maintaining species diversity and vegetation productivity. Climate change is likely to have major impacts on both factors. The aims of this project are to elucidate the impacts of climate change on the species ....Impacts of climate change on sustainability of temperate native pasture: an experiment. The sustainable use of temperate native pastures is important economically because of grazing and for biodiversity since they are home to many threatened plants. Native pasture sustainability depends on maintaining species diversity and vegetation productivity. Climate change is likely to have major impacts on both factors. The aims of this project are to elucidate the impacts of climate change on the species composition, productivity and nutritional quality of a grazed native pasture. This is important, as it will allow us to predict likely problems caused by global climate change and increase our understanding of the mechanisms underlying these changes.Read moreRead less
Reconstructing the evolution of climatic tolerances in conifers. This project aims to trace the evolution of climate tolerance in conifers by combining evidence from fossils, phylogenies, physiology and mathematics. The project plans to use innovative methods to overcome the biases in methods currently used to trace evolutionary change. The project plans to integrate data from three sources: the global fossil record, new models of current climatic tolerances of conifers, and mathematical simulat ....Reconstructing the evolution of climatic tolerances in conifers. This project aims to trace the evolution of climate tolerance in conifers by combining evidence from fossils, phylogenies, physiology and mathematics. The project plans to use innovative methods to overcome the biases in methods currently used to trace evolutionary change. The project plans to integrate data from three sources: the global fossil record, new models of current climatic tolerances of conifers, and mathematical simulations of how and when methods of reconstructing ancestral ecology fail. The combined results should show how this important group of organisms has responded to past climate change and how they will respond in the future. It should also provide improved estimates of past terrestrial climates.Read moreRead less
Viscous Effects in Free-Surface Flows. Australia has a proud record of achievement in the field of free-surface fluid mechanics. This project will build and extend these research achievements. It will provide new information about how fluid layers overturn and mix, which is an important process in oceanography. It will examine the sloshing behaviour of fluid in moving storage tanks, which is important in fuel transport and building design. The project will develop new mathematical methods fo ....Viscous Effects in Free-Surface Flows. Australia has a proud record of achievement in the field of free-surface fluid mechanics. This project will build and extend these research achievements. It will provide new information about how fluid layers overturn and mix, which is an important process in oceanography. It will examine the sloshing behaviour of fluid in moving storage tanks, which is important in fuel transport and building design. The project will develop new mathematical methods for solving these problems accurately, and will contribute to the next generation of research mathematicians in Australia. Read moreRead less
Algebraically informed models of biological sequence evolution. To make sense of the patterns they see in the natural world, biologists across fields as diverse as genetics, epidemiology and biogeography need an accurate picture of evolutionary history. DNA sequences provide an exciting means to establish this picture of the past, but to decode it successfully requires mathematical models of how DNA evolves. Mathematical inconsistencies have been identified with current approaches. In particular ....Algebraically informed models of biological sequence evolution. To make sense of the patterns they see in the natural world, biologists across fields as diverse as genetics, epidemiology and biogeography need an accurate picture of evolutionary history. DNA sequences provide an exciting means to establish this picture of the past, but to decode it successfully requires mathematical models of how DNA evolves. Mathematical inconsistencies have been identified with current approaches. In particular, understanding the effect of natural selection in different parts of the tree of life requires models that behave robustly in the face of shifting evolutionary processes. This project aims to use insights from algebraic methods to construct mathematically consistent models of wide biological utility.Read moreRead less
Managing infectious disease through partial wildlife social networks. This project aims to investigate the dynamics of the spread of infectious disease in wildlife, derived from incomplete information about contact networks. Infectious diseases in wildlife are difficult to track and control, because it is not feasible to monitor each individual in a population and know the contact network for a population. The project will create ways to best utilise incomplete observational data of contact netw ....Managing infectious disease through partial wildlife social networks. This project aims to investigate the dynamics of the spread of infectious disease in wildlife, derived from incomplete information about contact networks. Infectious diseases in wildlife are difficult to track and control, because it is not feasible to monitor each individual in a population and know the contact network for a population. The project will create ways to best utilise incomplete observational data of contact networks to develop robust predictions of disease spread and population fate, and to reliably predict the outcomes of management interventions. These robust prediction methods will provide better insights for conservation of Australian wildlife.Read moreRead less