Illuminating genomic dark matter to develop new interventions for parasites. This project aims to unravel the molecular basis of parasitism using leading-edge post-genomics approaches. This research expects to explore genomic ‘dark matter’ in the genome to discover how parasites survive and cause disease. The resultant shift in the understanding of molecular mechanisms and processes governing parasitism will lead to new ways of disrupting the intricate parasite-host relationship, which will tran ....Illuminating genomic dark matter to develop new interventions for parasites. This project aims to unravel the molecular basis of parasitism using leading-edge post-genomics approaches. This research expects to explore genomic ‘dark matter’ in the genome to discover how parasites survive and cause disease. The resultant shift in the understanding of molecular mechanisms and processes governing parasitism will lead to new ways of disrupting the intricate parasite-host relationship, which will translate into innovative technologies or products to ameliorate the burden of parasites in livestock animals. Expected socioeconomic benefits include lifting Australia’s scientific knowledge base, reputation in biology and biotechnology, livestock production and investment in translational research.Read moreRead less
Biophysics of the brain’s waste disposal system: Understanding why we sleep. This project aims to develop a new biophysical model of the brain, founded on the recently discovered glymphatic system responsible for waste disposal during sleep. It sets out to formulate, analyse, and validate rigorous new multiscale quantitative modelling – to advance the study of sleep and brain clearance dynamics, at timescales from hours to decades. Among expected outcomes are powerful models ready for applicatio ....Biophysics of the brain’s waste disposal system: Understanding why we sleep. This project aims to develop a new biophysical model of the brain, founded on the recently discovered glymphatic system responsible for waste disposal during sleep. It sets out to formulate, analyse, and validate rigorous new multiscale quantitative modelling – to advance the study of sleep and brain clearance dynamics, at timescales from hours to decades. Among expected outcomes are powerful models ready for application at both population and individual level, and testable predictions concerning the sleep patterns that lead to aggregation of waste in the brain and eventual cognitive decline. Project outcomes should also benefit society and the economy though translation into interventions for sleep disturbance – in future applied research.Read moreRead less
How beetles harness near-infrared properties to enhance energy efficiency. This project aims to discover how animals use nanophotonic structures to manipulate near infra-red light for thermal control and visual information. Almost nothing is currently known about the mechanism, function and evolution of near-infrared properties in animals, despite their potential importance for maintaining body temperatures within the critical thermal limits for survival. The project uses multidisciplinary techn ....How beetles harness near-infrared properties to enhance energy efficiency. This project aims to discover how animals use nanophotonic structures to manipulate near infra-red light for thermal control and visual information. Almost nothing is currently known about the mechanism, function and evolution of near-infrared properties in animals, despite their potential importance for maintaining body temperatures within the critical thermal limits for survival. The project uses multidisciplinary techniques from optical physics, physiology and evolutionary biology to reveal near-infrared adaptations in socially and economically important Christmas beetles. The intended outcomes include a bio-informed blueprint for a new class of functional nanomaterials that enhance energy efficiency.Read moreRead less
Untangling the matrix of bacterial biofilms. This research aims to use forefront molecular microbiology and biophysical approaches to advance fundamental knowledge on bacterial biofilms. These bacterial clusters are held together by an extracellular matrix comprised of bacterial-derived fibrous protein and the polysaccharide cellulose, which imparts structural integrity and resistance to antimicrobials. The major goals of this project are to dissect how bacteria regulate production of the biofil ....Untangling the matrix of bacterial biofilms. This research aims to use forefront molecular microbiology and biophysical approaches to advance fundamental knowledge on bacterial biofilms. These bacterial clusters are held together by an extracellular matrix comprised of bacterial-derived fibrous protein and the polysaccharide cellulose, which imparts structural integrity and resistance to antimicrobials. The major goals of this project are to dissect how bacteria regulate production of the biofilm matrix, and examine how changes in the composition of the matrix alters its properties, including the penetration of antimicrobial peptides and antibiotics. The outcomes will help address the economic burden of difficult to treat industrial, environmental and biomedical biofilms.Read moreRead less
Unravelling the role of heteroplasmy in mitochondrial adaptation. This project aims to unravel the evolutionary implications of heteroplasmy – a scenario in which multiple mitochondrial DNA genotypes exist in one individual. Recent studies indicate heteroplasmy is widespread, and can be caused by paternal transmission of mtDNA. But the effects of heteroplasmy on evolutionary processes remain unknown. Leveraging state-of-the-art methods, this project expects to generate new knowledge in the areas ....Unravelling the role of heteroplasmy in mitochondrial adaptation. This project aims to unravel the evolutionary implications of heteroplasmy – a scenario in which multiple mitochondrial DNA genotypes exist in one individual. Recent studies indicate heteroplasmy is widespread, and can be caused by paternal transmission of mtDNA. But the effects of heteroplasmy on evolutionary processes remain unknown. Leveraging state-of-the-art methods, this project expects to generate new knowledge in the areas of evolutionary ecology and mitochondrial genetics. Expected outcomes include discoveries that advance understanding of fundamental biological processes, and student training. Expected benefits include strengthening of Australia’s research capacity, by setting the research agenda in this rapidly developing field.Read moreRead less
Neural noise in human cognitive ageing and reserve. Age-related increases in neural noise degrade information transfer in the brain and lead to diminished cognitive function. Yet with cognitive reserve, some people are able to maintain healthy functioning well into their later years. This project aims to investigate the effects of neural noise on brain connectivity, cognitive performance and reserve, advancing breakthrough work on the neural physiology of healthy cognitive ageing and malleabilit ....Neural noise in human cognitive ageing and reserve. Age-related increases in neural noise degrade information transfer in the brain and lead to diminished cognitive function. Yet with cognitive reserve, some people are able to maintain healthy functioning well into their later years. This project aims to investigate the effects of neural noise on brain connectivity, cognitive performance and reserve, advancing breakthrough work on the neural physiology of healthy cognitive ageing and malleability of neural noise. This will be delivered by novel combinations of electrophysiology, neuroimaging and non-invasive brain stimulation. Benefits extend from developing neural markers for measuring cognitive reserve to new strategies for building resilience to age-related cognitive decline.Read moreRead less
Evolutionary models and biodiscovery tools from neurotoxic snake venoms. This project aims to identify the selection pressures that shape snake venom neurotoxins and how they interact with nicotinic acetylcholine receptors, and to elucidate their biodiscovery potential. This project aims to test these important toxins on model systems that represent natural prey items in order to determine the molecular and functional evolution of neurotoxic peptides. Expected outcomes include substantial contri ....Evolutionary models and biodiscovery tools from neurotoxic snake venoms. This project aims to identify the selection pressures that shape snake venom neurotoxins and how they interact with nicotinic acetylcholine receptors, and to elucidate their biodiscovery potential. This project aims to test these important toxins on model systems that represent natural prey items in order to determine the molecular and functional evolution of neurotoxic peptides. Expected outcomes include substantial contributions to the body of evolutionary biology knowledge, while also having the applied benefit of discovering novel compounds with potential for use in drug design and discovery. These outcomes will benefit Australian science and society by elucidating fundamental processes while revealing biodisovery resources.Read moreRead less
Adaptation by DNA download: Experimental evolution of a pangenome. This project aims to understand how microbes adapt when they can directly “download" new genes from their surrounding environment, or from other types of bacteria. Specifically, the proposed research will carry out the largest-scale measurements of the fitness effects of horizontally transferred genetic variation, to discover how each of these genes interacts with the environment, and with other genes. This project is expected to ....Adaptation by DNA download: Experimental evolution of a pangenome. This project aims to understand how microbes adapt when they can directly “download" new genes from their surrounding environment, or from other types of bacteria. Specifically, the proposed research will carry out the largest-scale measurements of the fitness effects of horizontally transferred genetic variation, to discover how each of these genes interacts with the environment, and with other genes. This project is expected to generate new knowledge in the fields of microbial evolution and microbiome science. The benefits of this cutting-edge research will be to strengthen Australia’s research capacity in these rapidly developing fields and to train a new generation of interdisciplinary scientists.Read moreRead less
Paving the way for ultra-long haul flights: strategies to mitigate jetlag. This project aims to develop and test strategies to mitigate jetlag, founded on biophysical modelling of circadian rhythms. It sets out to quantify the speed of circadian adaptation of sleep, alertness, and metabolism after transmeridian travel and to maximise speed of adaptation via optimised timing of light exposure, food, and exercise in-flight and on-the-ground. Expected outcomes include powerful models for jetlag str ....Paving the way for ultra-long haul flights: strategies to mitigate jetlag. This project aims to develop and test strategies to mitigate jetlag, founded on biophysical modelling of circadian rhythms. It sets out to quantify the speed of circadian adaptation of sleep, alertness, and metabolism after transmeridian travel and to maximise speed of adaptation via optimised timing of light exposure, food, and exercise in-flight and on-the-ground. Expected outcomes include powerful models for jetlag strategies, ready for application in air travel. The project will directly inform Qantas’ operations for ultra-long haul flights and their international network more broadly. Project outcomes will benefit society and the economy through improving travellers’ alertness, sleep, and reducing the risk of fatigue-related accidents.Read moreRead less
New mathematical approaches to learn the equations of life from noisy data. New mathematical models and mathematical modelling methods must be continually developed to interpret emerging biotechnology experiments. Contemporary research in tissue engineering involves growing tissues on 3d-printed scaffolds to mimic constrained in vivo geometries. Previous mathematical models of tissue growth focus on computationally expensive discrete mathematical models that are poorly suited for parameter infe ....New mathematical approaches to learn the equations of life from noisy data. New mathematical models and mathematical modelling methods must be continually developed to interpret emerging biotechnology experiments. Contemporary research in tissue engineering involves growing tissues on 3d-printed scaffolds to mimic constrained in vivo geometries. Previous mathematical models of tissue growth focus on computationally expensive discrete mathematical models that are poorly suited for parameter inference and experimental design. This project will deliver and deploy high-fidelity, computationally efficient moving boundary continuum mathematical models that will: (i) predict/interpret new experiments, (ii) provide quantitative insight into biological mechanisms, and (iii) enable reproducible experimental design.Read moreRead less