Integrating a physical and functional genetic map of Prunus dulcis. Genome wide physical mapping is the centrepiece of current genomics research in virtually all plant and animal species. The proposal seeks to champion the development of Prunus dulcis (Rosaceae) as a model perennial species towards parity with other plant model systems for gene discovery and validation. The Rosaceae represents a rich repository of genes of relevance to perenniality, adaptation, sustainable agriculture, health a ....Integrating a physical and functional genetic map of Prunus dulcis. Genome wide physical mapping is the centrepiece of current genomics research in virtually all plant and animal species. The proposal seeks to champion the development of Prunus dulcis (Rosaceae) as a model perennial species towards parity with other plant model systems for gene discovery and validation. The Rosaceae represents a rich repository of genes of relevance to perenniality, adaptation, sustainable agriculture, health and nutrition and the bioindustries. Ultimately, comparative genomics across the family will advance molecular eco-genetics via dissection of traits determining adaptive response. Access to user-friendly molecular markers will also bring greater precision to breeding programmes. Read moreRead less
Controlling accumulation of elements in the shoots of higher plants by manipulating processes in specific cell types in the roots. This project will provide novel, fundamental understanding of the processes controlling accumulation of elements in the shoots of plants. As such, it will impact on our understanding of processes relevant to stress tolerance, plant nutrition, human nutrition and the removal of toxic metals from soils by plants. These are all areas of great importance to Australian ag ....Controlling accumulation of elements in the shoots of higher plants by manipulating processes in specific cell types in the roots. This project will provide novel, fundamental understanding of the processes controlling accumulation of elements in the shoots of plants. As such, it will impact on our understanding of processes relevant to stress tolerance, plant nutrition, human nutrition and the removal of toxic metals from soils by plants. These are all areas of great importance to Australian agriculture, environmental sustainability and human health. The increased understanding arising from this project will underpin future work to increase agricultural productivity and the quality of life for all in the Australian and international communities.Read moreRead less
How common and what is the significance of cis-acting regulatory variation and genomic imprinting in plants? Plant based processes provide truly sustainable solutions to many of the challenges facing Australia. The proposed research will help elucidate how plants regulate variation in gene expression rather than changes in the structure of encoded proteins. This is an area of gene expression, that has not been approached before, that explains the plant's ability to respond to external stimuli. ....How common and what is the significance of cis-acting regulatory variation and genomic imprinting in plants? Plant based processes provide truly sustainable solutions to many of the challenges facing Australia. The proposed research will help elucidate how plants regulate variation in gene expression rather than changes in the structure of encoded proteins. This is an area of gene expression, that has not been approached before, that explains the plant's ability to respond to external stimuli. Variation between plant species in the number of genes does not fully explain the differences between them. This information will come not from seqenceing genomes but from investigation of regulatory elements. Read moreRead less
The genetic and molecular organisation of the self incompatibility gene region in the grasses. Self-incompatibility (SI) is a cell-cell recognition process used by plants to prevent self-pollination and force outcrossing. It is widespread, occurring in a third of plant families. Although studies of SI go back to the 1800s, the origin of SI remains a mystery. Recent advances in the molecular characterisation of SI loci in some species has re-ignited debate on its origins but has provided few answ ....The genetic and molecular organisation of the self incompatibility gene region in the grasses. Self-incompatibility (SI) is a cell-cell recognition process used by plants to prevent self-pollination and force outcrossing. It is widespread, occurring in a third of plant families. Although studies of SI go back to the 1800s, the origin of SI remains a mystery. Recent advances in the molecular characterisation of SI loci in some species has re-ignited debate on its origins but has provided few answers. This project uses the grasses to explore the origins of SI. As a model system, the grasses offer detailed genetic and molecular data and aspects of floral architecture associated with SI can be investigatedRead moreRead less
Optimising the Strategy for Breeding Micronutrient-Dense Staple Foods that Improve Human health and Nutrition. The project is part of a new paradigm for agriculture in which staple crops are bred with greater micronutrient density to improve human health. It generates strategic basic information on how nutrients interact in the body of animal models in absorption, transport and utilisation that will allow plant breeders to optimise the breeding strategy for maximum outcomes in health and minimum ....Optimising the Strategy for Breeding Micronutrient-Dense Staple Foods that Improve Human health and Nutrition. The project is part of a new paradigm for agriculture in which staple crops are bred with greater micronutrient density to improve human health. It generates strategic basic information on how nutrients interact in the body of animal models in absorption, transport and utilisation that will allow plant breeders to optimise the breeding strategy for maximum outcomes in health and minimum breeding cost. Animals deficient in the nutrients of most concern (iron, zinc, vitamin A - and inulin) will be fed new varieties with enhanced levels of these factors, and from the responses, a superior strategy will be developed.Read moreRead less
New strategies for reducing the concentrations of arsenic and cadmium in crop plants. The research is directed at reducing the concentrations in crops of cadmium and arsenic, two elements that accumulate in humans and can have a range of toxic effects. The results will have widespread implications for improving health in Australia, but are expected to have an even greater impact on populations in parts of Asia where contamination of soil and water by these elements is most severe. The project wi ....New strategies for reducing the concentrations of arsenic and cadmium in crop plants. The research is directed at reducing the concentrations in crops of cadmium and arsenic, two elements that accumulate in humans and can have a range of toxic effects. The results will have widespread implications for improving health in Australia, but are expected to have an even greater impact on populations in parts of Asia where contamination of soil and water by these elements is most severe. The project will train two junior scientists and foster scientific links with China. Read moreRead less
Estimating genotype-environment interaction using genomic information. This project aims to develop statistical methods that can explore genotype–environment interaction at the genomic level using genome-wide single nucleotide polymorphisms or sequence data. It plans to estimate how the effects of genetic variants change with changing environmental conditions and how overall genetic variance changes due to changing effects in specific gene regions. It plans to deliver statistical models and meth ....Estimating genotype-environment interaction using genomic information. This project aims to develop statistical methods that can explore genotype–environment interaction at the genomic level using genome-wide single nucleotide polymorphisms or sequence data. It plans to estimate how the effects of genetic variants change with changing environmental conditions and how overall genetic variance changes due to changing effects in specific gene regions. It plans to deliver statistical models and methods and an efficient algorithm implemented in software, which would broadly benefit the field of complex trait genetics. Methods to estimate genotype–environment interaction effects at the genomic level would help elucidate complex biological systems, including human genetic response to changing environmental factors and the potential adaptation of animals to changing environmental conditions.Read moreRead less
Reconstructing wheat evolution using ancient DNA. The domestication of wild grasses by farmers was a step change in human history; it led to the emergence of modern cereals and with them, western civilisation. This project will apply modern DNA sequencing methods to 5000-year-old cereal seeds to reconstruct the history of wheat, barley and other crops, and identify lost ancient forms and diversity.
Diversity in large crop genomes via enhanced recombination. The project aims to understand genetic and environmental factors that limit how fast genomic combinations can be generated by modifying the recombination rates between chromosomes. Plant breeding is based around genetic diversity, but modern breeding programs have captured only a small proportion of the variation available in wild relatives and land races. Knowledge of diversity in this wild germplasm pool is increasing and the challeng ....Diversity in large crop genomes via enhanced recombination. The project aims to understand genetic and environmental factors that limit how fast genomic combinations can be generated by modifying the recombination rates between chromosomes. Plant breeding is based around genetic diversity, but modern breeding programs have captured only a small proportion of the variation available in wild relatives and land races. Knowledge of diversity in this wild germplasm pool is increasing and the challenge is to quickly and efficiently introduce this variation into elite lines. This project’s findings are expected to transform wheat and barley breeding methods by unlocking the genetic diversity to produce new varieties. This will enhance and protect a critical and valuable rural industry.Read moreRead less