Discovery Early Career Researcher Award - Grant ID: DE230100178
Funder
Australian Research Council
Funding Amount
$453,913.00
Summary
Fast, lightweight and live nanopore sequencing analysis. This project aims to address limitations in nanopore sequencing (latest emerging technology in genomics) by applying advanced computational methods. This project expects to create new knowledge in bioinformatics and computer science through innovative approaches that leverage the live data streaming capability of nanopore devices to deliver results rapidly, or in real-time. Expected outcomes include improved, highly efficient analysis meth ....Fast, lightweight and live nanopore sequencing analysis. This project aims to address limitations in nanopore sequencing (latest emerging technology in genomics) by applying advanced computational methods. This project expects to create new knowledge in bioinformatics and computer science through innovative approaches that leverage the live data streaming capability of nanopore devices to deliver results rapidly, or in real-time. Expected outcomes include improved, highly efficient analysis methods and designs for future creation of custom computer hardware for nanopore analysis. This will facilitate widespread adoption of nanopore technology in bioscience research and applied domains (health, agriculture, ecology, biosecurity and forensics), including for portable in-the-field applications. Read moreRead less
The structure of heteromeric amyloid fibrils with signaling activity. This project aims to determine the composition, structure and properties of important protein complexes involved in a newly identified cell death pathway known as necroptosis. This cell death pathway removes unwanted or damaged cells during development or infection. These necroptosis protein complexes are unusual because they have a fibrillar amyloid structure, contain more than one protein type in the fibrils and have a funct ....The structure of heteromeric amyloid fibrils with signaling activity. This project aims to determine the composition, structure and properties of important protein complexes involved in a newly identified cell death pathway known as necroptosis. This cell death pathway removes unwanted or damaged cells during development or infection. These necroptosis protein complexes are unusual because they have a fibrillar amyloid structure, contain more than one protein type in the fibrils and have a functional, signalling role. The research will determine how these fibrils form and how the structures confers biological function. It could identify features in these fibrils that can be targeted as a means of ultimately preventing tissue damage after heart attack and stroke.Read moreRead less
Inhibiting protein-protein interactions involved in neural development and disease. This project will determine the molecular mechanisms by which the protein LMO4 (a regulator of brain development) binds to DEAF1 (which also regulates neural development) and CtIP (which protects against tumour formation). This will allow a set of reagents to be developed to help determine the functions of LMO4, and may ultimately be used to treat disease.
Plant Transfer Cells - Discovering the Mechanisms of Wall Ingrowth Formation. This project seeks fundamental molecular understanding of how specialized plant cells that are designed for optimum transport of nutrients develop. So-called "transfer cells" are important for efficient nutrient transport and distribution in many crop species of significance to agriculture. Discovering the mechanisms that coordinate development of these specialized cells will maintain Australia's international reputat ....Plant Transfer Cells - Discovering the Mechanisms of Wall Ingrowth Formation. This project seeks fundamental molecular understanding of how specialized plant cells that are designed for optimum transport of nutrients develop. So-called "transfer cells" are important for efficient nutrient transport and distribution in many crop species of significance to agriculture. Discovering the mechanisms that coordinate development of these specialized cells will maintain Australia's international reputation in this field of research, as well as provide technological opportunities to enhance crop yields by manipulating the efficiency of nutrient distribution in crop species. Read moreRead less
Induction of Plant Transfer Cells - Discovering Regulatory Networks. This project seeks molecular understanding of regulatory mechanisms responsible for inducing formation of specialized plant cells that are of central importance in controlling nutrient transport. These so-called "transfer cells" play pivotal roles in determining crop nutrition and hence yield under normal and stressful environments such as soil nutrient deficiencies and salinity. Discovering regulatory mechanisms that control f ....Induction of Plant Transfer Cells - Discovering Regulatory Networks. This project seeks molecular understanding of regulatory mechanisms responsible for inducing formation of specialized plant cells that are of central importance in controlling nutrient transport. These so-called "transfer cells" play pivotal roles in determining crop nutrition and hence yield under normal and stressful environments such as soil nutrient deficiencies and salinity. Discovering regulatory mechanisms that control formation of these specialized cells will maintain Australia's international reputation in this field of research. In addition, the information platform generated may provide technological opportunities to optimise nutrient flows in healthy plants, combat certain environmental stresses and control pathogen attack.
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Mapping networks governing cell state plasticity: how, where and when? Single cell organisms are the basic unit of life, yet, if they had not developed the ability to change cell states we would not exist today. Changing cell states lies at the core of almost every developmental and disease process in multicellular organisms. Building upon our fundamental discovery that stem cells and non-stem cells readily interconvert, we will now incorporate innovative cell systems and the development of our ....Mapping networks governing cell state plasticity: how, where and when? Single cell organisms are the basic unit of life, yet, if they had not developed the ability to change cell states we would not exist today. Changing cell states lies at the core of almost every developmental and disease process in multicellular organisms. Building upon our fundamental discovery that stem cells and non-stem cells readily interconvert, we will now incorporate innovative cell systems and the development of our new multi-layered systems biology strategy to elucidate the first comprehensive understanding of the cell biology that underlies cell state changes. These studies are a major step toward understanding the fundamentals of life. Read moreRead less
Investigation of the mechanisms underlying successful placentation. The overall aim of this project is to provide novel insights into the basic cellular processes that underpin placental development and to improve our ability to manipulate mammalian reproduction, both human and animal. The placenta is critical for intrauterine development because it determines the level of nutrition, oxygenation and maternal tolerance to the developing foetus. The project intends to explore the role of prorenin ....Investigation of the mechanisms underlying successful placentation. The overall aim of this project is to provide novel insights into the basic cellular processes that underpin placental development and to improve our ability to manipulate mammalian reproduction, both human and animal. The placenta is critical for intrauterine development because it determines the level of nutrition, oxygenation and maternal tolerance to the developing foetus. The project intends to explore the role of prorenin and its receptor as a novel mechanism driving placentation. Applications for expected project outcomes may include improved breeding of threatened animal species and economically valuable domestic animals as well as improved health care and fertility control for domesticated pets and feral animals. Read moreRead less
Understanding the potency and role of individual stem cells in the skin using Rainbow technology. To renew itself, the skin and its components rely on the activity of stem cells. This project will define more precisely the role of each individual stem cell by labelling them with a unique colour and following its fate. This project has the potential to change our current view on how the skin maintains and repairs itself.
Defining The Molecular Effectors Of Gene/environment Interaction On Mouse Heart Development
Funder
National Health and Medical Research Council
Funding Amount
$749,271.00
Summary
One third of all birth defects involve the heart, and are the most common cause of infant death. Some defects are due to genetic factors, but others arise when the pregnant mother is exposed to environmental stress. We will examine how one stress (low oxygen levels) causes abnormal heart formation in the embryo, look at what causes this at a molecular level, and explore if such stress increases the risk of heart defects in families with a history of such abnormalities
The function of small ribonucleic acid derived from the 5´ end of transfer ribonucleic acid (5´tRFs) in the regulation of gene expression and the control of the cell cycle. Small regulatory ribonucleic acid (RNAs) are key regulators of gene expression. The numbers of identified small RNAs are increasing, however the exact functions of many of these RNAs are not known. This project aims to describe the function of a small RNA which may play a role in suppressing uncontrolled cell division.