Neurogenesis in bilateral larval and radial adult body plans: identification of echinoderm homologues of the chordate central nervous system. The modern synthesis of embryology and gene expression studies, as undertaken in this project with sea stars, is a major way forward to achieve advances in our understanding of animal evolution and generate new insights into the mystery that surrounds the origin of our own phylum, the Chordata. This project utilises life history diversity in species that a ....Neurogenesis in bilateral larval and radial adult body plans: identification of echinoderm homologues of the chordate central nervous system. The modern synthesis of embryology and gene expression studies, as undertaken in this project with sea stars, is a major way forward to achieve advances in our understanding of animal evolution and generate new insights into the mystery that surrounds the origin of our own phylum, the Chordata. This project utilises life history diversity in species that are unique Australian fauna. Extreme life history diversity as seen in these sea stars is unparalleled on a global scale and provides an important resource to generate new discoveries on the processes underlying evolution in the sea and enhance our understanding of marine systems. Read moreRead less
The evolutionary transition from anaerobic to aerobic metabolism. This project aims to find out how life on Earth survived the revolutionary changes when cyanobacteria first released oxygen into the atmosphere. These events led to a transition from anoxic (oxygen-free) to oxic (oxygen-rich) conditions. A comparative genomic view across a series of photosynthetic organisms will be performed at the molecular level with ecological interpretation. Understanding of what metabolic changes occurred in ....The evolutionary transition from anaerobic to aerobic metabolism. This project aims to find out how life on Earth survived the revolutionary changes when cyanobacteria first released oxygen into the atmosphere. These events led to a transition from anoxic (oxygen-free) to oxic (oxygen-rich) conditions. A comparative genomic view across a series of photosynthetic organisms will be performed at the molecular level with ecological interpretation. Understanding of what metabolic changes occurred in response to the shifts in the environment will have wide implications for predicting the evolutionary events that are still occurring today, such as rapidly changing climatic conditions. This fundamental research will enhance Australia's profile in this field.Read moreRead less
Head and face development: dissecting tissue-specific gene function. The outcome of our investigation of the early development will inform us of the ways and means for the embryo to assemble the essential building blocks of the body, and insights into the developmental origin of birth defects. This knowledge will benefit the biomedical research community, the education sector and the general public by enabling the formulation of new hypotheses, enriching the curriculum, and providing an evidenc ....Head and face development: dissecting tissue-specific gene function. The outcome of our investigation of the early development will inform us of the ways and means for the embryo to assemble the essential building blocks of the body, and insights into the developmental origin of birth defects. This knowledge will benefit the biomedical research community, the education sector and the general public by enabling the formulation of new hypotheses, enriching the curriculum, and providing an evidence-based understanding of the genetic basis of congenital malformations for delivering informative counselling. The technical expertise gained from this project will enhance the nation's research capability through the sharing of skills and knowledge with other research teams in the academia and the industry. Read moreRead less
A role for Cited2, Transforming Growth Factor-beta and matrix metaloproteinases in trophoblast invasion and placenta formation. The placenta is essential for the growth and development of the fetus, and if it fails to form correctly during pregnancy, it can have dramatic effects that can result death in utero, or adult onset diseases. Our research aims to understand how one protein functions in placenta formation. We will also investigate how this protein works at the molecular level in a proces ....A role for Cited2, Transforming Growth Factor-beta and matrix metaloproteinases in trophoblast invasion and placenta formation. The placenta is essential for the growth and development of the fetus, and if it fails to form correctly during pregnancy, it can have dramatic effects that can result death in utero, or adult onset diseases. Our research aims to understand how one protein functions in placenta formation. We will also investigate how this protein works at the molecular level in a process that enables single cells to respond to molecules sent from a distance by other cells (TGF-beta signalling). This process is also very important for a host of other biological processes relevant to human health, including cancer.Read moreRead less
Lungfish Paired Fins and the Origin of Limbs as an Evolutionary Novelty. This project will utilise a uniquely Australian animal, the lungfish, to address a hitherto unresolved problem of considerable scientific significance - how a fish fin evolved into a tetrapod (four-legged animal) limb. The Australian lungfish is the most primitive of the four surviving genera of lobe-finned fish and is recognised as the closest living ancestor to the tetrapods. It is listed as 'vulnerable' in its native ha ....Lungfish Paired Fins and the Origin of Limbs as an Evolutionary Novelty. This project will utilise a uniquely Australian animal, the lungfish, to address a hitherto unresolved problem of considerable scientific significance - how a fish fin evolved into a tetrapod (four-legged animal) limb. The Australian lungfish is the most primitive of the four surviving genera of lobe-finned fish and is recognised as the closest living ancestor to the tetrapods. It is listed as 'vulnerable' in its native habitat. Macquarie University, however, has the only captive breeding population of lungfish in the world. We are thus uniquely placed to address critically important questions concerning the evolution of fish into tetrapods. Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE100100130
Funder
Australian Research Council
Funding Amount
$850,000.00
Summary
Systems biology: New generation DNA sequencing to functional analysis. The technique of DNA sequencing (or 'reading' the lines of the four repeating letters that make up the genetic code) illustrates how technological developments have become the main drivers in exploring the roles of genetic factors across a spectrum of research activities. Funding provided through this ARC grant will allow the purchase of the latest DNA sequencing platform, the Illumina Solexa, as well as equipment that will b ....Systems biology: New generation DNA sequencing to functional analysis. The technique of DNA sequencing (or 'reading' the lines of the four repeating letters that make up the genetic code) illustrates how technological developments have become the main drivers in exploring the roles of genetic factors across a spectrum of research activities. Funding provided through this ARC grant will allow the purchase of the latest DNA sequencing platform, the Illumina Solexa, as well as equipment that will be used to understand the biological function of the DNA sequencing results that are obtained. The equipment will allow Australian researchers to compete on an equal footing with the international leaders in understanding the roles played by genes in plants, microorganisms, animals and humans.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE230100271
Funder
Australian Research Council
Funding Amount
$463,618.00
Summary
Coordinating gene expression and cell size: the role of feedback regulation. This project aims to reveal how human cells coordinate the kinetics of messenger RNA (mRNA) transcript production, processing and degradation at the single-cell level. It expects to generate significant new biological knowledge of gene regulation by combining innovative interdisciplinary research methodologies in genetics, single-molecule imaging, mathematical modelling and quantitative cell biology. Expected outcomes i ....Coordinating gene expression and cell size: the role of feedback regulation. This project aims to reveal how human cells coordinate the kinetics of messenger RNA (mRNA) transcript production, processing and degradation at the single-cell level. It expects to generate significant new biological knowledge of gene regulation by combining innovative interdisciplinary research methodologies in genetics, single-molecule imaging, mathematical modelling and quantitative cell biology. Expected outcomes include enhanced training of researchers and to build Australia’s capability in the rapidly expanding fields of RNA biology and high-throughput microscopy. This should provide significant benefits for a myriad of applications including health, agriculture and veterinary sciences.Read moreRead less
Linking mutant zebrafish phenotypes with their underlying genetic lesions. Zebrafish mutants have been generated with many interesting abnormalities, but to understand these abnormalities, the defective genes must be identified by positional cloning. We seek to identify the defective genes underpinning four mutants. Mutant #562 develops a normal nervous system which then undergoes rapid degeneration. The mutant flotte lotte has abnormal gut development. Two mutants with defective early blood for ....Linking mutant zebrafish phenotypes with their underlying genetic lesions. Zebrafish mutants have been generated with many interesting abnormalities, but to understand these abnormalities, the defective genes must be identified by positional cloning. We seek to identify the defective genes underpinning four mutants. Mutant #562 develops a normal nervous system which then undergoes rapid degeneration. The mutant flotte lotte has abnormal gut development. Two mutants with defective early blood formation will be studied. We will establish techniques for several steps that will be useful for all zebrafish mapping projects. We expect the genetic characterization of these mutants to provide new insights into nerve cell survival, gut development, and blood formation.Read moreRead less
Using venoms to map critical and evolutionary conserved vulnerabilities. We have developed and applied new functional genomic approaches to study venom evolution. Using CRISPR screening, we find that unrelated venoms act on cells by exploiting the same vulnerabilities. By functionally mapping these vulnerabilities for all venom classes, we can begin to develop universal venom antidotes. Conversely, much of what we know about venom mechanisms comes from a small percentage of the biodiversity with ....Using venoms to map critical and evolutionary conserved vulnerabilities. We have developed and applied new functional genomic approaches to study venom evolution. Using CRISPR screening, we find that unrelated venoms act on cells by exploiting the same vulnerabilities. By functionally mapping these vulnerabilities for all venom classes, we can begin to develop universal venom antidotes. Conversely, much of what we know about venom mechanisms comes from a small percentage of the biodiversity within a venom, and we have developed genomic tools to study the venom “dark matter”. This work will lead to the full molecular characterisation of venom biodiversity, and new venom components will be useful for research or as novel medicines.Read moreRead less