Simulating viral evolution and genetic complexity. This project has direct relevance to understanding the growth of viral infections, and therefore has possible practical applications in disease research and control. Examples of these are emerging diseases in humans such as those caused by HIV-1, SARS coronavirus and Dengue virus, which cause considerable human suffering throughout the world. A major part of current research into these diseases involves attempts to model the evolutionary geneti ....Simulating viral evolution and genetic complexity. This project has direct relevance to understanding the growth of viral infections, and therefore has possible practical applications in disease research and control. Examples of these are emerging diseases in humans such as those caused by HIV-1, SARS coronavirus and Dengue virus, which cause considerable human suffering throughout the world. A major part of current research into these diseases involves attempts to model the evolutionary genetics and dynamics of virus populations in order to understand how to control epidemics, develop vaccines and design drugs. The research program is designed to provide new computational modelling tools for this purpose, which may have wider applications as well.
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National Macadamia Conservation Program. Macadamia is a national icon, and the only indigenous Australian plant food crop to be commercialised. However, it is vulnerable to extinction in the wild, needing conservation action. University, government, industry and community sectors will work together applying cutting edge research methodologies to produce a systematic conservation and recovery plan for Macadamia. This requires: Habitat modelling to predict past, contemporary and potential distribu ....National Macadamia Conservation Program. Macadamia is a national icon, and the only indigenous Australian plant food crop to be commercialised. However, it is vulnerable to extinction in the wild, needing conservation action. University, government, industry and community sectors will work together applying cutting edge research methodologies to produce a systematic conservation and recovery plan for Macadamia. This requires: Habitat modelling to predict past, contemporary and potential distributions for advising resource discovery and rehabilitation; Genetic variation modelling to assess quality and distinctness of native genetic resources and potential for rehabilitation by natural colonisation; and Developing a unifying statistical framework to support this work.Read moreRead less
Response and vulnerability of tropical rainforest plants to experimental drought. This project will assess the vulnerability of rainforest plants to a large-scale experimental drought in the Daintree rainforest of north Queensland, using a canopy crane to access all vertical forest layers. This will provide a unique opportunity to understand how rainforests could be affected by future climate change.
Global change: Rainforest responses to experimental drought. How will rainforests respond if droughts increase in the future? In a globally unique experiment, this project will examine how Australian tropical rainforests are affected by a large-scale experimental drought, using a canopy crane to assess plant responses at all vertical forest levels. It will contrast demographic and physiological responses of an array of plant species and functional groups between experimental and control plots wh ....Global change: Rainforest responses to experimental drought. How will rainforests respond if droughts increase in the future? In a globally unique experiment, this project will examine how Australian tropical rainforests are affected by a large-scale experimental drought, using a canopy crane to assess plant responses at all vertical forest levels. It will contrast demographic and physiological responses of an array of plant species and functional groups between experimental and control plots where tree growth, composition, soil water and atmospheric exchange have been monitored since 1999. Drought responses of key species and functional groups will be compared with their distributions across regional rainfall gradients to yield crucial insights into the potential impacts of future climate change on rainforests.Read moreRead less
Developing a mechanistic basis for coral reef conservation. This project aims to provide an evidence base for coral reef management to be targeted towards regions at greatest risk, and those that have the greatest capacity for acclimation under near-future climate change. This project will undertake an innovative trans-disciplinary analysis of coral thermal tolerance and the implications for targeted coral reef conservation to mitigate the impacts of climate change across the Great Barrier Reef ....Developing a mechanistic basis for coral reef conservation. This project aims to provide an evidence base for coral reef management to be targeted towards regions at greatest risk, and those that have the greatest capacity for acclimation under near-future climate change. This project will undertake an innovative trans-disciplinary analysis of coral thermal tolerance and the implications for targeted coral reef conservation to mitigate the impacts of climate change across the Great Barrier Reef (GBR). The project will provide significant benefits, by assisting in the maintenance of the goods and services (tourism, fisheries, shoreline protection) provided to Australia by the GBR.Read moreRead less
Landscape level effects on dispersal behaviour and gene flow in the logrunner, a rainforest restricted bird. Dispersal is thought to be critical for the persistence of small avian populations in fragmented landscapes. However, our knowledge of dispersal is limited. I will combine behavioural observations on radiotagged birds and powerful genetic markers to examine the effects of habitat fragmentation on the dispersal behaviour of a rainforest restricted bird, the logrunner. This study will deter ....Landscape level effects on dispersal behaviour and gene flow in the logrunner, a rainforest restricted bird. Dispersal is thought to be critical for the persistence of small avian populations in fragmented landscapes. However, our knowledge of dispersal is limited. I will combine behavioural observations on radiotagged birds and powerful genetic markers to examine the effects of habitat fragmentation on the dispersal behaviour of a rainforest restricted bird, the logrunner. This study will determine how landscape structure influences the movement of juvenile logrunners, investigate the causes and consequences of variation in juvenile dispersal behaviour, and use molecular data to determine how connectivity between habitats effects the genetic structure of logrunner populations.Read moreRead less
Hydraulic control on water use, growth and survival in tropical rainforest. This project aims to measure drought-related limits to water transport in the woody xylem tissue of trees in Australian tropical rainforests, to understand how this influences tree water use, photosynthesis, health and mortality risk. Tropical rainforests are sensitive to climate variability, especially drought, but this sensitivity is poorly understood, despite large effects regionally and globally. This project will co ....Hydraulic control on water use, growth and survival in tropical rainforest. This project aims to measure drought-related limits to water transport in the woody xylem tissue of trees in Australian tropical rainforests, to understand how this influences tree water use, photosynthesis, health and mortality risk. Tropical rainforests are sensitive to climate variability, especially drought, but this sensitivity is poorly understood, despite large effects regionally and globally. This project will compare forests that contrast strongly in seasonal drought stress, and use the information to develop a model designed for species-diverse forest, with subsequent potential global application. The understanding gained will enable widely applicable advances designed to feed through rapidly to regional- and global-scale models that inform land use, economic and social policy-making.Read moreRead less
A Bayesian framework for metapopulation dynamics of species in endangered communities: integrating demographic, environmental and genetic data. Biodiversity conservation is a spatial and temporal problem. Populations change in time, constrained by the structure and spatial division of their habitat. This study will develop a tool that can be used to assess the influence of environmental fluctuations and landscape heterogeneity on the persistence of endemic species in the mound springs of the Gr ....A Bayesian framework for metapopulation dynamics of species in endangered communities: integrating demographic, environmental and genetic data. Biodiversity conservation is a spatial and temporal problem. Populations change in time, constrained by the structure and spatial division of their habitat. This study will develop a tool that can be used to assess the influence of environmental fluctuations and landscape heterogeneity on the persistence of endemic species in the mound springs of the Great Artesian Basin. Using a Bayesian framework to integrate data from diverse sources, we will develop models for the biodiversity impacts of groundwater withdrawal and climate change in central Australia. These tools are essential for management of this ecosystem, which has been listed as an 'endangered community' under the Environmental Protection and Biodiversity Conservation Act of 1999.Read moreRead less
Bubble, Bubble CO2 is the trouble: A Natural Ocean Acidification Experiment in a coral reef setting. Carbon dioxide seep sites expose shallow coral reefs in Papua New Guinea to volcanic carbon dioxide resulting in gradients of seawater ranging from pH 8.0 (normal) to a more acidic pH of 7.5. Some areas of these reefs experience carbon dioxide exposure equivalent to IPCC predictions for 2050 and 2100. This project will reconstruct seawater pH using radiocarbon as a novel tracer of carbon dioxide ....Bubble, Bubble CO2 is the trouble: A Natural Ocean Acidification Experiment in a coral reef setting. Carbon dioxide seep sites expose shallow coral reefs in Papua New Guinea to volcanic carbon dioxide resulting in gradients of seawater ranging from pH 8.0 (normal) to a more acidic pH of 7.5. Some areas of these reefs experience carbon dioxide exposure equivalent to IPCC predictions for 2050 and 2100. This project will reconstruct seawater pH using radiocarbon as a novel tracer of carbon dioxide input at a coral reef site that has been exposed to high carbon dioxide due to volcanic seeps (seep carbon dioxide has no carbon-14) for an unknown period of time (at least many decades, but possibly centuries). These results will help to understand the time it takes to change calcifying organisms into “winners” or “losers” as an analog for Ocean Acidification due to increased atmospheric carbon dioxide input.Read moreRead less
A Genomic Dissection of Natural Adaptation in Mate Recognition. Adaptation is a fundamental area of evolutionary biology but we know surprisingly little about its underlying genetic basis. As a process, adaptation poses several challenges for Australian society including bacterial evolution of resistance to antibiotics, HIV resistance to antiviral medications and the evolution of pesticide resistance in agricultural pests. This study will use a model system and genomic tools to test theoretical ....A Genomic Dissection of Natural Adaptation in Mate Recognition. Adaptation is a fundamental area of evolutionary biology but we know surprisingly little about its underlying genetic basis. As a process, adaptation poses several challenges for Australian society including bacterial evolution of resistance to antibiotics, HIV resistance to antiviral medications and the evolution of pesticide resistance in agricultural pests. This study will use a model system and genomic tools to test theoretical models of the genetic basis of adaptation. This integrative approach will enhance Australia's research profile in genomics and evolutionary biology. The project will provide emerging scientists with skills in areas including genomics, molecular biology, evolutionary biology and agricultural genetics.Read moreRead less