Stochastic Modelling of Genetic Regulatory Networks: Subtitle - Genetic Regulation is a Noisy Business. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in ....Stochastic Modelling of Genetic Regulatory Networks: Subtitle - Genetic Regulation is a Noisy Business. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in cellular processes. This project will explore these roles and will develop an integrated complex systems modelling, simulation and visualisation framework. This will be used on an exemplar application for lineage commitment in haematopoiesis and for exploring and validating genetic regulatory models in general.Read moreRead less
Developing an Essential Research Platform for the Molecular Engineering of Photosystem II. Sunlight reaching the earth is used by plants and algae to drive photosynthesis and to store chemical energy. Possibly the most fundamental contribution photosynthesis makes to earth is to generate gaseous oxygen, the result of solar driven water-splitting chemistry. However, the mechanism behind water-splitting is not exactly known. In this proposal we will construct a new model cyanobacteria host to stu ....Developing an Essential Research Platform for the Molecular Engineering of Photosystem II. Sunlight reaching the earth is used by plants and algae to drive photosynthesis and to store chemical energy. Possibly the most fundamental contribution photosynthesis makes to earth is to generate gaseous oxygen, the result of solar driven water-splitting chemistry. However, the mechanism behind water-splitting is not exactly known. In this proposal we will construct a new model cyanobacteria host to study water splitting. The host organism will be genetically modified to enable mechanistic questions of water oxidation to be tested and will provide new and pure forms of isolated protein. This model organism will provide team of international researchers with a remarkable tool new to study photosynthesis.Read moreRead less
Understanding how the primate brain processes visual information. Being able to see is a crucial aspect of our daily lives, which happens so effortlessly that it tends to be taken for granted. In comparison with other animals and artificial systems, the primate visual cortex is unsurpassed in its capacity to interpret complex and dynamic environments, in a manner that is fast and computationally robust. Discovering how this happens in terms of interactions between cells in the brain can help us ....Understanding how the primate brain processes visual information. Being able to see is a crucial aspect of our daily lives, which happens so effortlessly that it tends to be taken for granted. In comparison with other animals and artificial systems, the primate visual cortex is unsurpassed in its capacity to interpret complex and dynamic environments, in a manner that is fast and computationally robust. Discovering how this happens in terms of interactions between cells in the brain can help us design more efficient artificial systems capable of vision. This in turn can have profound implications for the creation of new technologies such as artificial eyes, autonomous robots, and intelligent sensors, and may also result in future benefits for medical science.Read moreRead less
To flee or not to flee: surviving on incomplete information. Even lowly animals, like the Australian fiddler crabs we will be investigating, are surprisingly competent in making the right decisions in complex situations. They actively acquire information and make good use of it to assure their immediate safety and their long term gains. Animals are exquisitely honed by evolution and we would benefit greatly by understanding what makes them so competent: on a theoretical level, we may learn about ....To flee or not to flee: surviving on incomplete information. Even lowly animals, like the Australian fiddler crabs we will be investigating, are surprisingly competent in making the right decisions in complex situations. They actively acquire information and make good use of it to assure their immediate safety and their long term gains. Animals are exquisitely honed by evolution and we would benefit greatly by understanding what makes them so competent: on a theoretical level, we may learn about efficient rules of good decision making and on a practical level, we may be able to design more flexible, robust and clever machines. Besides being useful in this wider context, the results of our research will thus also contribute to a new and 'sophisticated' appreciation of the cognitive design of animal.Read moreRead less
Colour vision in marsupials. The ability to distinguish colours is a crucial aspect of vision, providing vital data for sexual selection, predator detection and food acquisition. Studies of mammalian colour vision have largely overlooked marsupials. Our recent investigation of spectral sensitivity in two Australian species revealed a colour discrimination capacity beyond that of placentals (excluding primates), implying disparate evolutionary pressures in the two groups. We will provide the fi ....Colour vision in marsupials. The ability to distinguish colours is a crucial aspect of vision, providing vital data for sexual selection, predator detection and food acquisition. Studies of mammalian colour vision have largely overlooked marsupials. Our recent investigation of spectral sensitivity in two Australian species revealed a colour discrimination capacity beyond that of placentals (excluding primates), implying disparate evolutionary pressures in the two groups. We will provide the first comprehensive description of colour vision in marsupials, studying species with differing rhythmicities, habitats and diets. Wavelength sensitivity and molecular structure of retinal visual pigments will be assessed in relation to evolutionary influences and ecological demands.
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Anti-ageing role for relaxin in blood vessels. Arteries stiffen with age. This is due to increased arterial smooth muscle tone and alterations in the extracellular matrix. In a sense, the artery undergoes ?fibrosis? with aging. In light of the anti-fibrotic attributes of the peptide hormone relaxin observed in other tissues, this collaborative project will investigate the potential role for relaxin in opposing arterial ?fibrosis? associated with aging. We will test the hypothesis that a reductio ....Anti-ageing role for relaxin in blood vessels. Arteries stiffen with age. This is due to increased arterial smooth muscle tone and alterations in the extracellular matrix. In a sense, the artery undergoes ?fibrosis? with aging. In light of the anti-fibrotic attributes of the peptide hormone relaxin observed in other tissues, this collaborative project will investigate the potential role for relaxin in opposing arterial ?fibrosis? associated with aging. We will test the hypothesis that a reduction in arterial relaxin expression in older animals is a major cause of arterial stiffening. Further studies will investigate the mechanisms by which relaxin administration can alleviate this phenomenon.Read moreRead less
Relaxin action in the heart, kidney, lung and uterus: understanding fibrosis. Relaxin is a peptide hormone associated with pregnancy. We have recently generated a relaxin gene knockout mouse and exciting preliminary data show that without relaxin, non-pregnant mice develop signs of fibrosis in the heart, lung and uterus. Combining our expertise in molecular biology, pharmacology and physiology, the overall objective of this project is to investigate the functions and mechanisms of relaxin action ....Relaxin action in the heart, kidney, lung and uterus: understanding fibrosis. Relaxin is a peptide hormone associated with pregnancy. We have recently generated a relaxin gene knockout mouse and exciting preliminary data show that without relaxin, non-pregnant mice develop signs of fibrosis in the heart, lung and uterus. Combining our expertise in molecular biology, pharmacology and physiology, the overall objective of this project is to investigate the functions and mechanisms of relaxin action in these organs. Our findings will provide important basic information on relaxin physiology and enable us to implement a long-term partnership with Connetics to understand how relaxin regulates collagen production and/or the development of fibrosis.Read moreRead less
Target detection in visual clutter. The interdisciplinary nature of the project will offer a stimulating environment for training a postdoctoral worker in the hot topic of computational neuroscience. While computationally expensive solutions to moving target detection in clutter have been implemented using conventional engineering, this project will offer insight into the efficiency of the biological brain (with benefit of millions of years of evolution towards compact, economical and optimal so ....Target detection in visual clutter. The interdisciplinary nature of the project will offer a stimulating environment for training a postdoctoral worker in the hot topic of computational neuroscience. While computationally expensive solutions to moving target detection in clutter have been implemented using conventional engineering, this project will offer insight into the efficiency of the biological brain (with benefit of millions of years of evolution towards compact, economical and optimal solutions). The results will assist development of efficient artificial intelligence. It will also assist our ongoing collaborations with defence partners to develop and apply algorithms in artificial vision systems. Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0882357
Funder
Australian Research Council
Funding Amount
$500,000.00
Summary
A Computational Facility for Multi-scale Modelling in Bio and Nanotechnology. Bio- and nanotechnology have the potential to transform Australian industry and research, and to bring significant benefits for consumers. The scope will include materials for energy storage, medical diagnostics and cellular imaging, bioengineering, drug and gene delivery, improved foods by molecular design, novel materials for electronics, improved techniques for particle processing, and molecular sieves for filtering ....A Computational Facility for Multi-scale Modelling in Bio and Nanotechnology. Bio- and nanotechnology have the potential to transform Australian industry and research, and to bring significant benefits for consumers. The scope will include materials for energy storage, medical diagnostics and cellular imaging, bioengineering, drug and gene delivery, improved foods by molecular design, novel materials for electronics, improved techniques for particle processing, and molecular sieves for filtering/purifying water and gases. The dedicated computing facility will enable a fast interactive cycle between simulation and experiment in these areas, accelerating the pace of research and applications.Read moreRead less
Regenerating lizard tails: A model for understanding the process of lymphangiogenesis. In humans, impaired lymphatic drainage in limbs causes the debilitating swelling termed lymphoedema. Lymphoedema affects 500,000,000 people worldwide. In the developed world lymphoedema predominantly results from surgery for cancer, and occurs in approximately 25% of breast cancer patients. We will examine lymph vessel regeneration (lymphangiogenesis) in a naturally regenerating, complex structure (the lizard ....Regenerating lizard tails: A model for understanding the process of lymphangiogenesis. In humans, impaired lymphatic drainage in limbs causes the debilitating swelling termed lymphoedema. Lymphoedema affects 500,000,000 people worldwide. In the developed world lymphoedema predominantly results from surgery for cancer, and occurs in approximately 25% of breast cancer patients. We will examine lymph vessel regeneration (lymphangiogenesis) in a naturally regenerating, complex structure (the lizard tail), to describe the regrowth process and determine the abundance, location, functional properties and molecular control of the new lymphatics. Furthermore, if reptilian lymphatic growth factors can promote lymphangiogenesis in mammals, we can design novel therapeutic approaches using reptilian ligands to promote lymphangiogenesis in lymphoedematous human tissues.Read moreRead less