Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This pr ....Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This project will benefit ongoing conservation efforts, and is timely given the ongoing eradication of rats from Lord Howe Island where this species once lived. Read moreRead less
Evolution of halophytes: a phyloinformatic approach to understanding and exploiting the traits underlying salt-tolerance in plants. Salinity is an increasing burden on the Australian economy & environment, with >2 million ha of salt-affected land, at an annual cost to agriculture over $187 million. One solution is to exploit naturally salt-tolerant plants to increase productive agricultural land and restore salt-affected environments. To do this, we must increase basic knowledge of the diversity ....Evolution of halophytes: a phyloinformatic approach to understanding and exploiting the traits underlying salt-tolerance in plants. Salinity is an increasing burden on the Australian economy & environment, with >2 million ha of salt-affected land, at an annual cost to agriculture over $187 million. One solution is to exploit naturally salt-tolerant plants to increase productive agricultural land and restore salt-affected environments. To do this, we must increase basic knowledge of the diversity & distribution of salt-tolerance. This project is the first to use DNA sequences from thousands of species to understand the evolution of salt-tolerance in order to provide the foundation for the development of new crop varieties, selection of species that can be developed for bioremediation, and identification of traits that will be profitable targets for breeding programs. Read moreRead less
Genomics for persistence of Australian freshwater fish. Biodiversity faces an unpredictable cocktail of impacts and global environmental change, against which the best insurance is genetic diversity. We will develop genomic measures of ecological-genetic functions and evolutionary potential for managing Australian freshwater fish.
Using genetics to recover Australia's lost history. This project aims to use historic hair samples collected by anthropological expeditions in the early 20th Century to generate the first genetic map of Aboriginal Australia – in order to reconstruct Australia’s pre-European genetic and cultural past. The map and the detailed contextual and genealogical information from museum archives will assist Aboriginal communities and individuals to reconstruct their personal and family history and trace an ....Using genetics to recover Australia's lost history. This project aims to use historic hair samples collected by anthropological expeditions in the early 20th Century to generate the first genetic map of Aboriginal Australia – in order to reconstruct Australia’s pre-European genetic and cultural past. The map and the detailed contextual and genealogical information from museum archives will assist Aboriginal communities and individuals to reconstruct their personal and family history and trace ancestry and augment oral or written records. The combination of cutting-edge science, detailed archival research, and a comprehensive family outreach and reporting program will be a step change in assisting Australia’s reconciliation process, the Stolen Generation, and repatriation of Indigenous remains.Read moreRead less
Upscaling genetic management of wildlife populations. Earth’s biodiversity is in crisis: many species are threatened with extinction and need our help. Genetic management helps to stop extinctions and promotes the health and continued existence of our wildlife. This project aims to understand how to use genome science to support preservation of four endangered species in changing climates and apply these learnings to help other species to survive and thrive. Anticipated outcomes include innovati ....Upscaling genetic management of wildlife populations. Earth’s biodiversity is in crisis: many species are threatened with extinction and need our help. Genetic management helps to stop extinctions and promotes the health and continued existence of our wildlife. This project aims to understand how to use genome science to support preservation of four endangered species in changing climates and apply these learnings to help other species to survive and thrive. Anticipated outcomes include innovative approaches to aid conservation decision-making, automated analyses of genome data, and improved conservation training. The expected benefits include larger, healthier populations of four species, new ways of saving other species, and the provision of important resources for conservation managers.Read moreRead less
Discovering Patterns using Near Unsupervised Leaning to Support the Quick Detection of New Animal Disease Outbreaks Caused by Viruses. Without the capability to identify and study the vast majority of extant viruses using traditional laboratory techniques, emerging threats to Australian livestock health cannot be efficiently diagnosed or treated. New approaches based on high-throughput sequencing have recently been developed to study such viruses, but making sense of the sequence data is still a ....Discovering Patterns using Near Unsupervised Leaning to Support the Quick Detection of New Animal Disease Outbreaks Caused by Viruses. Without the capability to identify and study the vast majority of extant viruses using traditional laboratory techniques, emerging threats to Australian livestock health cannot be efficiently diagnosed or treated. New approaches based on high-throughput sequencing have recently been developed to study such viruses, but making sense of the sequence data is still a complex problem. Together with the project's Partner Organisations, including YourGene Biosciences Australia and the CSIRO Australian Animal Health Laboratory, this project aims to develop new computational methods to broaden the scope of detection and analysis of unknown viruses, enhancing the capability for research into the causative viral agents of animal diseases.Read moreRead less
Genetic rescue of Australian wildlife. Genetic rescue of Australian wildlife. This project aims to test genetic rescue as an efficient recovery technique for threatened plants and animals. Genetic rescue is under-utilised, even though it is overwhelmingly beneficial. This project will convert management actions on five Endangered/Critically Endangered species into rigorous experiments that measure the fitness benefits of genetic rescue, and demonstrate genome-wide consequences. Anticipated outco ....Genetic rescue of Australian wildlife. Genetic rescue of Australian wildlife. This project aims to test genetic rescue as an efficient recovery technique for threatened plants and animals. Genetic rescue is under-utilised, even though it is overwhelmingly beneficial. This project will convert management actions on five Endangered/Critically Endangered species into rigorous experiments that measure the fitness benefits of genetic rescue, and demonstrate genome-wide consequences. Anticipated outcomes include innovative genetic rescue protocols, a framework for genetic rescue, and leading-edge conservation training. Expected benefits are increased persistence of species that are otherwise unresponsive to management, and a new path to saving endangered species.Read moreRead less
Non-CO2 greenhouse gas emissions in afforested ecosystems in southeastern Australia - fluxes, processes and regional budget. There are no data available about the extent of emissions of the non-CO2 greenhouse gases nitrous oxide and methane from soils of forest ecosystems in Australia and the current methodolgy to quantify these emissions contains high uncertainties. Using the latest technology available we propose to i) measure emission rates of afforested ecosystems for non-CO2 greenhouse gase ....Non-CO2 greenhouse gas emissions in afforested ecosystems in southeastern Australia - fluxes, processes and regional budget. There are no data available about the extent of emissions of the non-CO2 greenhouse gases nitrous oxide and methane from soils of forest ecosystems in Australia and the current methodolgy to quantify these emissions contains high uncertainties. Using the latest technology available we propose to i) measure emission rates of afforested ecosystems for non-CO2 greenhouse gases in relation to previous land-use in southeastern Australia, ii) identify the processes controlling the emissions, iii) use the obtained data to calibrate a biogeochemical model, and iv) use the model to estimate regional inventories for non-CO2 greenhouse gas emissions in southeastern Australia.Read moreRead less
E. coli as an indicator of faecal contamination in the Australian context. The goal of this research is to improve our ability to use Escherichia coli as an indicator of water quality by determining the extent to which non-faecal sources of E. coli contribute to coliform counts and to develop a method to differentiate non-faecal E. coli from those that are faecal derived.
Integrative assessment of disturbance and land-use change on total greenhouse gas balance and nutrient cycling in savanna ecosystems. Climate change and variability is expected to have an impact on the NT environment and economy. This project will enable NT specific calibrations of climate variability-land use models, such as the National Carbon Accounting System. The NT Government will have access to a high quality database and calibrated models relating to greenhouse gas emissions as a functio ....Integrative assessment of disturbance and land-use change on total greenhouse gas balance and nutrient cycling in savanna ecosystems. Climate change and variability is expected to have an impact on the NT environment and economy. This project will enable NT specific calibrations of climate variability-land use models, such as the National Carbon Accounting System. The NT Government will have access to a high quality database and calibrated models relating to greenhouse gas emissions as a function of land use change. The project will improve estimates and management of GHG and provide a basis for the NT to potentially exploit future carbon-trading initiatives or GHG abatement schemes as fundamental data describing emissions as a function of land use will be available. This is of national significance given the size of the savanna biome in Australia.Read moreRead less