Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This pr ....Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This project will benefit ongoing conservation efforts, and is timely given the ongoing eradication of rats from Lord Howe Island where this species once lived. Read moreRead less
Evolution of halophytes: a phyloinformatic approach to understanding and exploiting the traits underlying salt-tolerance in plants. Salinity is an increasing burden on the Australian economy & environment, with >2 million ha of salt-affected land, at an annual cost to agriculture over $187 million. One solution is to exploit naturally salt-tolerant plants to increase productive agricultural land and restore salt-affected environments. To do this, we must increase basic knowledge of the diversity ....Evolution of halophytes: a phyloinformatic approach to understanding and exploiting the traits underlying salt-tolerance in plants. Salinity is an increasing burden on the Australian economy & environment, with >2 million ha of salt-affected land, at an annual cost to agriculture over $187 million. One solution is to exploit naturally salt-tolerant plants to increase productive agricultural land and restore salt-affected environments. To do this, we must increase basic knowledge of the diversity & distribution of salt-tolerance. This project is the first to use DNA sequences from thousands of species to understand the evolution of salt-tolerance in order to provide the foundation for the development of new crop varieties, selection of species that can be developed for bioremediation, and identification of traits that will be profitable targets for breeding programs. Read moreRead less
Molecular phylogeny and biodiversity of the plant family Rutaceae: evidence for Australian-New Caledonian biogeography. The results will contribute biological evidence for geological models of the evolution of New Caledonia and the Southwest Pacific region. Analyses will also contribute to improvement of methods and data interpretation in the field of historical biogeography. The molecular phylogeny will be the foundation for a new predictive classification of Australian Rutaceae at the level ....Molecular phylogeny and biodiversity of the plant family Rutaceae: evidence for Australian-New Caledonian biogeography. The results will contribute biological evidence for geological models of the evolution of New Caledonia and the Southwest Pacific region. Analyses will also contribute to improvement of methods and data interpretation in the field of historical biogeography. The molecular phylogeny will be the foundation for a new predictive classification of Australian Rutaceae at the level of tribes and genera. Improved phylogenetic classification underpins the delivery of biodiversity research, goods and services in Australia. Outcomes of improved taxonomy include species identification for ecological studies, identification of rare species, geographic areas of high conservation value and plants for horticulture.Read moreRead less
A predictive phylogenetic classification for Australian acacias and their tropical legume relatives worldwide. The results of this project will provide the foundation for a new predictive classification of Australian acacias and their relatives, among tropical legumes. Improved phylogenetic classification will underpin the delivery of biodiversity research, goods and services in Australia and neighbouring tropical countries. Outcomes of improved taxonomy include species identification and spec ....A predictive phylogenetic classification for Australian acacias and their tropical legume relatives worldwide. The results of this project will provide the foundation for a new predictive classification of Australian acacias and their relatives, among tropical legumes. Improved phylogenetic classification will underpin the delivery of biodiversity research, goods and services in Australia and neighbouring tropical countries. Outcomes of improved taxonomy include species identification and species selection in various industries and environmental programs. Acacias and legumes are used in agro-forestry, as shade trees for crops, fuel wood, stock feed, nitrogen fixation, planting for land reclamation in arid and salinity-affected areas, and as new plantation timber products. Read moreRead less
Resolving the classification and evolutionary history of the eucalypts. This collaborative project addresses the need to achieve a stable classification of the eucalypts, Australia's most ecologically and commercially important trees. The industry partners are lead agencies with responsibility for classification and identification of biodiversity, delivering taxonomic knowledge for end-users. Despite molecular studies in the last decade, the phylogenetic relationships of a number of the major ....Resolving the classification and evolutionary history of the eucalypts. This collaborative project addresses the need to achieve a stable classification of the eucalypts, Australia's most ecologically and commercially important trees. The industry partners are lead agencies with responsibility for classification and identification of biodiversity, delivering taxonomic knowledge for end-users. Despite molecular studies in the last decade, the phylogenetic relationships of a number of the major subgroups of the eucalypts are unknown. We will sequence new regions of DNA and combine this with morphological data to resolve the relationships of the eucalypt lineages, and hence their classification. Phylogenetic analysis also aids identification of high-value areas for conservation of relictual species.Read moreRead less
Resolving the molecular phylogeny and classification of Australian acacias, a major biodiversity resource. This collaboration with the Royal Botanic Gardens Melbourne will resolve the phylogeny of Australia's largest group of flowering plants, the acacias, to form the basis of a new classification. With more than 960 species, Australian acacias are a major biodiversity resource yet their genetic diversity and evolutionary relationships are poorly known. We will determine the main taxonomic gro ....Resolving the molecular phylogeny and classification of Australian acacias, a major biodiversity resource. This collaboration with the Royal Botanic Gardens Melbourne will resolve the phylogeny of Australia's largest group of flowering plants, the acacias, to form the basis of a new classification. With more than 960 species, Australian acacias are a major biodiversity resource yet their genetic diversity and evolutionary relationships are poorly known. We will determine the main taxonomic groups and their relationships by sequencing the DNA of more than 300 species. Acacias are of ecological importance and of use in land reclamation, horticulture, and rural craftwood industries.
Read moreRead less
Environmental stress profiling (ESP): Molecular profiling of sediment microbial communities for improved biological monitoring in aquatic ecosystems. Water resource management is a key issue for environmental sustainability in Australia and strategies that include ecological principles are important to improve present conditions and reduce further degradation. Current biomonitoring methods suffer from a low degree of sensitivity that can seriously impact their effectiveness as early warning sign ....Environmental stress profiling (ESP): Molecular profiling of sediment microbial communities for improved biological monitoring in aquatic ecosystems. Water resource management is a key issue for environmental sustainability in Australia and strategies that include ecological principles are important to improve present conditions and reduce further degradation. Current biomonitoring methods suffer from a low degree of sensitivity that can seriously impact their effectiveness as early warning signals of ecological disturbance. We propose to combine molecular and ecotoxicological assessment of the effect of zinc toxicity on microbial communities to provide rapid pollution sensitive bioassessment. Our research will lead to a better understanding of the cause and effect of heavy metal pollution within aquatic ecosystems and greater insight on how to reduce and repair the negative effects.Read moreRead less
Genomics and mixed source populations in wildlife translocations. Translocation is a conservation strategy to help the plight of endangered species, and is becoming increasing important to mitigate against climate change. However translocations often fail. Theory suggests mixing individuals from different source populations would benefit species' genomic diversity and potentially success rates, however this is untested in animals. Also unclear is what parts of the genome are important for mitiga ....Genomics and mixed source populations in wildlife translocations. Translocation is a conservation strategy to help the plight of endangered species, and is becoming increasing important to mitigate against climate change. However translocations often fail. Theory suggests mixing individuals from different source populations would benefit species' genomic diversity and potentially success rates, however this is untested in animals. Also unclear is what parts of the genome are important for mitigating against climate change. Using an endangered lizard model, this project aims to understand how to best start new populations by 1) providing the first empirical test in terrestrial vertebrates of using mixed source populations; and 2) uncovering regions of the genome important for considering in translocations.Read moreRead less
Islands of rocks: geckos as a model system to understand patterns of biodiversity, endemism and speciation in the Kimberley. Australia is renowned for its diversity of lizards, yet a plethora of new "cryptic" gecko species continue to be discovered. The project will densely sample the complex Kimberley to understand the evolution of its geckos, which will shed light on true levels of species diversity and the geological and environmental history of this biodiversity hotspot.
Improving stream management using ecological modelling and DNA barcodes. Rivers and streams provide invaluable ecosystem services, yet are commonly degraded by human activities: a problem likely to be exacerbated by thermal and flow regimes being altered by climate change. Stream biodiversity is both a value and an indicator of ecological health: effective stream management requires prediction of biodiversity responses to natural environmental and human-impact gradients. By compiling a dataset o ....Improving stream management using ecological modelling and DNA barcodes. Rivers and streams provide invaluable ecosystem services, yet are commonly degraded by human activities: a problem likely to be exacerbated by thermal and flow regimes being altered by climate change. Stream biodiversity is both a value and an indicator of ecological health: effective stream management requires prediction of biodiversity responses to natural environmental and human-impact gradients. By compiling a dataset of macroinvertebrate species using new DNA metabarcoding, modelling their distributions, and ranking biodiversity by reach, we will develop molecular and quantitative spatial tools to provide data-driven, landscape-scale decision support for protecting and restoring streams: an urgent need for stream managers globally.Read moreRead less