Bio-inspired Computing for Problems with Chance Constraints. Bio-inspired algorithms have successfully been applied to a wide range of optimisation problems. Uncertainties in real-world applications can lead to critical failures of production schedules or safe critical systems. Chance constraints model such uncertainties and allow to limit the possibility of such failures. This future fellowship builds up the area of bio-inspired computing for problems with chance constraints. It develops high ....Bio-inspired Computing for Problems with Chance Constraints. Bio-inspired algorithms have successfully been applied to a wide range of optimisation problems. Uncertainties in real-world applications can lead to critical failures of production schedules or safe critical systems. Chance constraints model such uncertainties and allow to limit the possibility of such failures. This future fellowship builds up the area of bio-inspired computing for problems with chance constraints. It develops high performing bio-inspired algorithms for stochastic problems where the constraints can only be violated with a small probability. The outcomes will lead to more effective and reliable optimisation methods for complex planning processes in areas of national priority such as mining and manufacturing.Read moreRead less
Next generation photonic waveguide sensors enabled by machine learning. This project aims to establish the next frontier in photonic waveguide sensing, by using machine learning to shift the complexity out of conventional photonic-waveguide/optical-fibre sensors and into smart detection algorithms. The complexity and instability of multimode photonic waveguides, traditionally a hinderance to sensing, will be advantageously employed to train deep learning models for sensing. Expected outcomes inc ....Next generation photonic waveguide sensors enabled by machine learning. This project aims to establish the next frontier in photonic waveguide sensing, by using machine learning to shift the complexity out of conventional photonic-waveguide/optical-fibre sensors and into smart detection algorithms. The complexity and instability of multimode photonic waveguides, traditionally a hinderance to sensing, will be advantageously employed to train deep learning models for sensing. Expected outcomes include the creation of intelligent photonic sensors that can, in principle, measure any environmental parameter using any optical waveguide material. It will create new critically needed measurement capabilities for challenging harsh environments, such as extreme temperature and in-vivo biochemical sensing.Read moreRead less
Evolution, adaptation and resilience of Australian freshwater fishes. This project will integrate comparative ecological genomics (in the wild and in the lab), phenotypic data and spatially-explicit modelling approaches to assess adaptation and vulnerability of aquatic biodiversity to environmental change. It focuses on a family of Australian freshwater fishes that evolved in response to hydrological disturbance and shows contemporary patterns of biodiversity shaped by hydroclimatic variation an ....Evolution, adaptation and resilience of Australian freshwater fishes. This project will integrate comparative ecological genomics (in the wild and in the lab), phenotypic data and spatially-explicit modelling approaches to assess adaptation and vulnerability of aquatic biodiversity to environmental change. It focuses on a family of Australian freshwater fishes that evolved in response to hydrological disturbance and shows contemporary patterns of biodiversity shaped by hydroclimatic variation and anthropogenic pressures. The project expects to disclose a positive correlation between family-wide adaptive capacity and variance in ecological disturbance. This work will address fundamental and novel questions about factors shaping adaptation and resilience along naturally and anthropogenically disturbed ecosystems.Read moreRead less
Resolving how five million years of dramatic climatic changes shaped Australia's unique fauna. Australia’s biota is a product of its unique heritage, tectonic history and most especially its climate. Over the past five million years it has been beset by a series of intense climatic shifts driven by a combination of global and regional factors. This project will be the first to track faunal responses to environmental changes across this critical interval. It will establish the dynamics of the ori ....Resolving how five million years of dramatic climatic changes shaped Australia's unique fauna. Australia’s biota is a product of its unique heritage, tectonic history and most especially its climate. Over the past five million years it has been beset by a series of intense climatic shifts driven by a combination of global and regional factors. This project will be the first to track faunal responses to environmental changes across this critical interval. It will establish the dynamics of the origin of the modern southern vertebrate fauna, analysing changes in diversity, diet and community structure. By exploring associations between phases of faunal turnover and key climatic transitions, it will bring a Southern Hemisphere perspective to evolutionary models of Cenozoic faunal change largely generated to date from Northern Hemisphere data.Read moreRead less
Identifying the genes and population histories that drive rapid adaptive change and speciation. This project will uncover the genetic variation and demographic histories that allow rapid adaptation and speciation in natural populations. It will leverage the powerful framework provided by Indo-Australian sea snakes, and new gene sequencing technologies, to reconstruct the evolutionary histories of genes, populations and species. Using this data, it will address inter-related key questions that ar ....Identifying the genes and population histories that drive rapid adaptive change and speciation. This project will uncover the genetic variation and demographic histories that allow rapid adaptation and speciation in natural populations. It will leverage the powerful framework provided by Indo-Australian sea snakes, and new gene sequencing technologies, to reconstruct the evolutionary histories of genes, populations and species. Using this data, it will address inter-related key questions that are critical to effective biodiversity conservation but have rarely been evaluated in the same taxon. It will address what genetic changes are involved in adaptive shifts and speciation, whether these originate de novo or from pre-existing variation and how gene flow and changes in population size promote or constrain adaptation and speciation.Read moreRead less
DNA and the missing: ancient DNA and advanced forensic identification. Identifying the remains of missing persons, disaster victims and war dead is of major social and cultural importance and has significant implications for national and international justice systems. This project will apply expertise in analysis of ancient DNA to build capacity and expertise within Australia to identify highly degraded human remains.
Adapting to a changing world: mothers as drivers of evolutionary change. This project will improve our understanding of how organisms will adapt to the unprecedented speed and magnitude of human-induced environmental change. By identifying how mothers modify their offspring to better match the prevailing environment, it will address the role of mothers in directing and accelerating adaptation in our changing world.
An integrated molecular approach to human evolution. This project aims to use the power of High Throughput Sequencing to investigate a range of genetic mechanisms that facilitate rapid human adaptation to diverse environments. This project expects to create the first ultra-high-quality Aboriginal Australian reference genome using Single Molecule, Real-Time Sequencing, which will expand the known range of human genomic and non-genomic variation. The results should offer the first detailed, long- ....An integrated molecular approach to human evolution. This project aims to use the power of High Throughput Sequencing to investigate a range of genetic mechanisms that facilitate rapid human adaptation to diverse environments. This project expects to create the first ultra-high-quality Aboriginal Australian reference genome using Single Molecule, Real-Time Sequencing, which will expand the known range of human genomic and non-genomic variation. The results should offer the first detailed, long-term reconstruction of the evolutionary history of human adaptability to specific environmental and cultural stressors. Importantly, the translation of the results to biomedical research will shed new light on the origins of modern diseases.Read moreRead less
Continuous tooth replacement in mammals: revealing the fundamental processes in tooth generation and movement. This project will investigate how molar teeth are made in mammals by examining the nabarlek, or little rock-wallaby, which is one of a handful of mammals that is able to regenerate new molars throughout its life. These new teeth migrate through the bone in order to move into the correct position in the mouth. By investigating two well-studied organisms, the mouse and the tammar wallaby, ....Continuous tooth replacement in mammals: revealing the fundamental processes in tooth generation and movement. This project will investigate how molar teeth are made in mammals by examining the nabarlek, or little rock-wallaby, which is one of a handful of mammals that is able to regenerate new molars throughout its life. These new teeth migrate through the bone in order to move into the correct position in the mouth. By investigating two well-studied organisms, the mouse and the tammar wallaby, as well as the nabarlek itself, the developmental processes and genes involved in molar generation and movement will be revealed. This project will integrate findings in regenerative medicine, evolutionary biology, materials engineering and palaeontology to reveal the mechanisms and origins of this astounding capability.Read moreRead less
Stories from the past: the impact of industrialisation on the human microbiome. This project aims to explore the history and origin of ‘Industrial’ diseases such as obesity, diabetes, heart disease and autism. Non-communicable, ‘Industrial’ diseases are rising at an alarming rate in Australia, and changes to the beneficial microorganisms within the human body (microbiota) may be to blame. This project will explore how human microbiota have changed over the past 100 years in response to cultural, ....Stories from the past: the impact of industrialisation on the human microbiome. This project aims to explore the history and origin of ‘Industrial’ diseases such as obesity, diabetes, heart disease and autism. Non-communicable, ‘Industrial’ diseases are rising at an alarming rate in Australia, and changes to the beneficial microorganisms within the human body (microbiota) may be to blame. This project will explore how human microbiota have changed over the past 100 years in response to cultural, environmental, and lifestyle factors linked with Industrialisation. This approach will allow stories from the past to inform modern medical treatment strategies and public health decisions in the future. The project will identify changes in environment, diet, hygiene, and medicine that have altered human microbiota in the past and sparked the Industrial disease epidemic in Australia today.Read moreRead less