Origin of genomically-encoded communication in animals: deciphering the role of peptide signalling in the sea sponge Amphimedon queenslandica. The purpose of this research is to understand the evolutionary origin and essential roles of peptide communication in humans and other animals. Knowledge gleaned from this study will shed light on how peptide signalling influences animal life at its most fundamental level, including potentially how abnormal cell communication causes disease.
Australian Laureate Fellowships - Grant ID: FL110100044
Funder
Australian Research Council
Funding Amount
$3,001,626.00
Summary
Origin, evolution and roles of cardinal genomic features underpinning animal multicellular complexity. As the first genome project from our oceans, the sea sponge Amphimedon heralds a new era of marine science for Australia. Using post-genomic approaches, this project will show how studying marine organisms can produce the most fundamental insights into not only multicellular life but also into human diseases and cancer that originally evolved from our oceans.
Phylogeography, Conservation Genetics and Stocking Management of Perches and Basses. This project will use DNA data to address fundamental questions about the origin and maintenance of biodiversity in a popular and widely distributed fish group. From a conservation perspective, the project will produce a benchmark about management of fish resources. We will investigate questions related to important conservation issues (including the recovery plan of a nationally threatened species) and the mana ....Phylogeography, Conservation Genetics and Stocking Management of Perches and Basses. This project will use DNA data to address fundamental questions about the origin and maintenance of biodiversity in a popular and widely distributed fish group. From a conservation perspective, the project will produce a benchmark about management of fish resources. We will investigate questions related to important conservation issues (including the recovery plan of a nationally threatened species) and the management of stocking activities in recreational fisheries of coastal and inland waters. The latter is particularly relevant to rural communities since they provide both social and economic benefits to rural people.Read moreRead less
Variation in larval gene expression in a marine invertebrate: implications for population divergence via differential settlement response. Evolutionary and ecological functional genomics is an emerging field that integrates gene profiling technologies with experimental and field approaches of ecology and evolution. I take this approach to address a key problem in marine invertebrate biology: how do larvae respond to their environment and how does variation in this response influence the distribu ....Variation in larval gene expression in a marine invertebrate: implications for population divergence via differential settlement response. Evolutionary and ecological functional genomics is an emerging field that integrates gene profiling technologies with experimental and field approaches of ecology and evolution. I take this approach to address a key problem in marine invertebrate biology: how do larvae respond to their environment and how does variation in this response influence the distribution and evolution of a species? I will use a marine gastropod (abalone) model, for which there exists substantial development and population genetic data, and established aquaculture methodologies. Outcomes of this study will enhance knowledge of the stock structure of this and other commercial fisheries, as well as aquaculture efficiency.Read moreRead less
Population structure in the giant Australian cuttlefish - implications for management of a unique eco-tourism and fishery resource in regional Australia. A management strategy for the giant Australian cuttlefish in regional South Australia is required urgently because of potential conflict between ecotourism and fishery sectors. At present, development of a management strategy is stymied by lack of information on stock structure and movements. Analyses of variation in gene frequencies, morphom ....Population structure in the giant Australian cuttlefish - implications for management of a unique eco-tourism and fishery resource in regional Australia. A management strategy for the giant Australian cuttlefish in regional South Australia is required urgently because of potential conflict between ecotourism and fishery sectors. At present, development of a management strategy is stymied by lack of information on stock structure and movements. Analyses of variation in gene frequencies, morphometric and chemical trace element profiles in calcified structures among locations and years will enable the geographic extent of populations or stocks to be determined, including whether natal homing occurs. Such information is critical to sustainable management of the species and design of a marine protected area in the upper Spencer Gulf.Read moreRead less
Epigenetic integration of genomic and environmental information in honey bees. Environmental factors such as nutrition, drugs or childhood neglect alter gene activity without a change to the DNA code and may result in a range of conditions such as cancer, obesity and mental illness. Such epigenetic phenomena are driven by subtle and poorly understood modifications of the genome known as DNA methylation. Our aim is to study the link between DNA methylation and environmental influences. We aspire ....Epigenetic integration of genomic and environmental information in honey bees. Environmental factors such as nutrition, drugs or childhood neglect alter gene activity without a change to the DNA code and may result in a range of conditions such as cancer, obesity and mental illness. Such epigenetic phenomena are driven by subtle and poorly understood modifications of the genome known as DNA methylation. Our aim is to study the link between DNA methylation and environmental influences. We aspire to understand how environmental signals trigger the reprogramming of transcriptional control of genetic networks that lead to contrasting phenotypic and behavioural outcomes using the honey bee modelRead moreRead less
ARC Centre in Bioinformatics. The Australian Centre for Genome-Phenome Bioinformatics will examine how the genome comes to life in the mammalian cell during differentiation and development. We will model, visualise and experimentally validate the complex cellular systems and regulatory networks that control the transformation of genomic information into biological structure and function. We will develop novel approaches and tools to improve health, optimise agricultural production and exploit ne ....ARC Centre in Bioinformatics. The Australian Centre for Genome-Phenome Bioinformatics will examine how the genome comes to life in the mammalian cell during differentiation and development. We will model, visualise and experimentally validate the complex cellular systems and regulatory networks that control the transformation of genomic information into biological structure and function. We will develop novel approaches and tools to improve health, optimise agricultural production and exploit new cell technologies. The Centre will build critical mass and national focus in bioinformatics to generate the human capital and intellectual property that Australia needs to compete in advanced bioscience and biotechnology.Read moreRead less
Seascape genetics for shark management: an innovation in sustainable fisheries modelling. This project will use novel genetic, chemical and spatial modelling techniques to assess the long-term viability of bronze whaler and dusky shark fisheries in southern Australia. Results will be used to implement sustainable management of the fisheries to ensure persistence of these threatened sharks.
Statistical methods for detection of non-coding RNAs in eukaryote genomes. Understanding how eukaryotic cells work is a major goal of 21st century biology. A crucial step will be to catalogue the functional components of eukaryotic genomes. Australian researchers must be involved in this process at an early stage, in order to maximise commercial opportunities, attract quality researchers and position ourselves for further advances. This project will make major contributions to international effo ....Statistical methods for detection of non-coding RNAs in eukaryote genomes. Understanding how eukaryotic cells work is a major goal of 21st century biology. A crucial step will be to catalogue the functional components of eukaryotic genomes. Australian researchers must be involved in this process at an early stage, in order to maximise commercial opportunities, attract quality researchers and position ourselves for further advances. This project will make major contributions to international efforts in this area, via the development of statistical methods for segmenting genomes, classification of those segments, and study of the resulting classes. In the long term, enhanced understanding of eukaryotic cells will lead to breakthroughs in biology, and to medical, pharmaceutical, agricultural and scientific advances.Read moreRead less
The mucosal immune system of fish: analysis of the immune repertoire in gut-and gill-associated lymphoid tissues in trout. Infectious disease causes major economic loss to the aquaculture industry, highlighting the need for effective vaccination strategies. While oral or immersion vaccination represents the most cost effective means of protecting fish against infectious disease there are problems associated with inducing an effective immune response in fish that will assist our industry partner ....The mucosal immune system of fish: analysis of the immune repertoire in gut-and gill-associated lymphoid tissues in trout. Infectious disease causes major economic loss to the aquaculture industry, highlighting the need for effective vaccination strategies. While oral or immersion vaccination represents the most cost effective means of protecting fish against infectious disease there are problems associated with inducing an effective immune response in fish that will assist our industry partner (Novartis Animal Vaccines Ltd) to develop improved fish vaccines. The project will provide postgraduate training in the area of fish immunology that is vital to the developing Australian aquaculture industry.Read moreRead less