Efficient and effective methods for classifying massive time series data. This project aims to transform the theory and practice of time series classification. The current state of the art cannot handle the massive numbers of time series that describe many critical problems facing humanity, such as disease transmission and climate change. This project seeks to develop methods that can analyse dynamic processes at global scale, delivering the most accurate classifiers feasible within a given comp ....Efficient and effective methods for classifying massive time series data. This project aims to transform the theory and practice of time series classification. The current state of the art cannot handle the massive numbers of time series that describe many critical problems facing humanity, such as disease transmission and climate change. This project seeks to develop methods that can analyse dynamic processes at global scale, delivering the most accurate classifiers feasible within a given computational budget. Expected outcomes of this project include efficient, effective and broadly applicable time series classification technologies. This should provide significant benefits to myriad sectors, transforming data science for time series problems and supporting innovation in industry, commerce and government.Read moreRead less
Advanced Machine Learning with Bilevel Optimization. There is an urgent need to develop a new machine learning (ML) paradigm that can overcome data-privacy and model-size constraints in real-world applications. This project aims to develop an advanced paradigm of ML with bilevel optimisation, called bilevel ML. A theoretically-guaranteed fast approximate solver and a new fuzzy bilevel learning framework will be developed to achieve the aim in complex situations; a methodology to transfer knowled ....Advanced Machine Learning with Bilevel Optimization. There is an urgent need to develop a new machine learning (ML) paradigm that can overcome data-privacy and model-size constraints in real-world applications. This project aims to develop an advanced paradigm of ML with bilevel optimisation, called bilevel ML. A theoretically-guaranteed fast approximate solver and a new fuzzy bilevel learning framework will be developed to achieve the aim in complex situations; a methodology to transfer knowledge and an approach to fast-adapt bilevel optimization solutions when required computing resources change. The anticipated outcomes should significantly improve the reliability of ML with benefits for safety learning and computing resource optimisation in ML-based data analytics.Read moreRead less
Toward Human-guided Safe Reinforcement Learning in the Real World. This project aims to investigate human-guided safe reinforcement learning (RL). Safe RL is an important topic that could enable real applications of RL systems by addressing safety constraints. Existing safe RL assumes the availability of specified safety constraints in mathematical or logical forms. This project proposes to study learning safety objectives from information provided directly by humans or indirectly via language m ....Toward Human-guided Safe Reinforcement Learning in the Real World. This project aims to investigate human-guided safe reinforcement learning (RL). Safe RL is an important topic that could enable real applications of RL systems by addressing safety constraints. Existing safe RL assumes the availability of specified safety constraints in mathematical or logical forms. This project proposes to study learning safety objectives from information provided directly by humans or indirectly via language models, and human-guided continuous correction for safety improvements. The established theories and developed algorithms will advance frontier technologies in AI and contribute to a wide range of real applications of safe RL, such as robotics and autonomous driving, bringing enormous social and economic benefits. Read moreRead less
A genetic analysis of the role of an atypical hexokinase in gene regulation. This project addresses a question which is relevant to all living things-how do changes in the environment of a cell bring about a change in gene expression? The aim of this project is to investigate the role of hexokinases in gene regulation by studying the Aspergillus nidulans xprF gene, which encodes an an unusual hexokinase. Hexokinases are thought to be the glucose sensors in plants, animals and fungi, and play a ....A genetic analysis of the role of an atypical hexokinase in gene regulation. This project addresses a question which is relevant to all living things-how do changes in the environment of a cell bring about a change in gene expression? The aim of this project is to investigate the role of hexokinases in gene regulation by studying the Aspergillus nidulans xprF gene, which encodes an an unusual hexokinase. Hexokinases are thought to be the glucose sensors in plants, animals and fungi, and play a role in the development of diabetes in humans. In plants, sugars affect many processes including growth, flowering, photosynthesis, nitrogen metabolism, starch synthesis, pigmentation and response to pathogens.Read moreRead less
The transcriptional co-repressor C-terminal Binding Protein (CtBP) in metabolic control. This project will provide insights into the genes that regulate the storage of fat. We will learn about basic biology but will also discover mechanisms that may be used to influence fat storage in human health. We will also consolidate Australia's expertise in the use of the genetic model organism, the worm C. elegans, and validate the findings in mammalian systems. Finally, the process of training young sci ....The transcriptional co-repressor C-terminal Binding Protein (CtBP) in metabolic control. This project will provide insights into the genes that regulate the storage of fat. We will learn about basic biology but will also discover mechanisms that may be used to influence fat storage in human health. We will also consolidate Australia's expertise in the use of the genetic model organism, the worm C. elegans, and validate the findings in mammalian systems. Finally, the process of training young scientists in these modern systems, will also equip future researchers to make additional contributions to Australia's research output.Read moreRead less
RNA splicing: factors and mechanisms. Most primary gene transcripts must have their noncoding intronic sequences spliced out before the mRNA can be translated. Moreover, alternative splicing enables cells to generate a far more proteins than there are genes in the nucleus. Based on our proven success with ZNF265 we will isolate novel RNA interactors and their partners, colocalize these in intranuclear compartments, and elucidate their effect on pre-mRNA splicing. This will provide timely spin-of ....RNA splicing: factors and mechanisms. Most primary gene transcripts must have their noncoding intronic sequences spliced out before the mRNA can be translated. Moreover, alternative splicing enables cells to generate a far more proteins than there are genes in the nucleus. Based on our proven success with ZNF265 we will isolate novel RNA interactors and their partners, colocalize these in intranuclear compartments, and elucidate their effect on pre-mRNA splicing. This will provide timely spin-offs to the Human genome Project and EST sequence information, where the finding of only approx. 30,000 genes in our genome highlights the important role of alternative splicing in generating the large proteome repertoire of cells. This will bring considerable benefits to science, society, and the biotech industry.Read moreRead less
Genetic dissection of a regulatory deubiquitlyation network. The potential impact of this work is widespread, because although it is known that ubiquitlyation has regulatory consequences in multicellular eukaryotes, individual networks have not been completely described in higher eukaryotes. Knowledge gained about fundamental processes in the A. nidulans model system is directly applicable to fungi used in biotechnology in the food, beverage, enzyme and pharmaceutical production industries, and ....Genetic dissection of a regulatory deubiquitlyation network. The potential impact of this work is widespread, because although it is known that ubiquitlyation has regulatory consequences in multicellular eukaryotes, individual networks have not been completely described in higher eukaryotes. Knowledge gained about fundamental processes in the A. nidulans model system is directly applicable to fungi used in biotechnology in the food, beverage, enzyme and pharmaceutical production industries, and to fungal pathogens. Since the fungal genes that form the basis of this project are conserved in higher eukaryotes including humans, the knowledge will be transferable to these systems. A further benefit that cannot be overstated is the research education and training opportunities provided.
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A new mechanism of gene regulation. This project will advance our knowledge of how genes are switched on and off, by focusing on a very common class of gene regulatory proteins known as zinc finger proteins. The results of this study will improve our understanding of the fundamental molecular events that underpin gene regulation and how we might control it in fields such as biotechnology and gene therapy.
New mechanisms of DNA recognition by zinc-finger domains. The work described in this proposal carries long-term benefits to the health of Australians. Many debilitating diseases, including many varieties of cancer, arise as a result of a breakdown in the normal regulation of gene transcription. It is only once we have a thorough understanding of transcriptional regulation in normal organisms that we will be in a position to devise effective therapies to deal with the disorders that result from a ....New mechanisms of DNA recognition by zinc-finger domains. The work described in this proposal carries long-term benefits to the health of Australians. Many debilitating diseases, including many varieties of cancer, arise as a result of a breakdown in the normal regulation of gene transcription. It is only once we have a thorough understanding of transcriptional regulation in normal organisms that we will be in a position to devise effective therapies to deal with the disorders that result from aberrant gene expression. Our proposed research program also provides the opportunity to train younger scientists in state-of-the-art molecular and structural biology, thus representing a significant national benefit. Read moreRead less
Molecular mechanism of regulation of human renin mRNA. Genetic technologies and genomics research are an international priority likely to reap rich rewards intellectually and commercially. The shrinking of the once-touted gene number to a more modest level has been accompanied by a corresponding increase in the complexity in the protein products arising from each gene, and even more so the methods used by cells to control gene expression. By elucidating the latter for a key gene we will open up ....Molecular mechanism of regulation of human renin mRNA. Genetic technologies and genomics research are an international priority likely to reap rich rewards intellectually and commercially. The shrinking of the once-touted gene number to a more modest level has been accompanied by a corresponding increase in the complexity in the protein products arising from each gene, and even more so the methods used by cells to control gene expression. By elucidating the latter for a key gene we will open up new avenues for control of gene expression in various organisms. Devising novel means of chemically modulating stability of specific mRNA molecules will have beneficial implications for health, livestock production and agriculture.Read moreRead less