Improving crops from the ground up: genetic solutions to optimise roots. This project aims to develop future crops with optimised root systems by overcoming genetic constraints that currently restrict their potential. Exploiting advances in genomics, transcriptomics, epigenomics and genome editing, this project expects to advance understanding of the biology and genetic controls of root development and responses to concurrent stressors, including drought, nutrient deficiency and soil-borne disea ....Improving crops from the ground up: genetic solutions to optimise roots. This project aims to develop future crops with optimised root systems by overcoming genetic constraints that currently restrict their potential. Exploiting advances in genomics, transcriptomics, epigenomics and genome editing, this project expects to advance understanding of the biology and genetic controls of root development and responses to concurrent stressors, including drought, nutrient deficiency and soil-borne disease. It is anticipated that project outcomes will support the development of crops equipped with novel root traits, enhancing resource-use efficiency and yield stability amid climate variability. This globally relevant research is designed to benefit the sustainability and profitability of the Australian grains industry.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE210100854
Funder
Australian Research Council
Funding Amount
$461,249.00
Summary
Model-directed bioengineering strategy for accelerating crop improvement. The aim is to use an advanced mechanistic crop model to investigate the interacting plant physiological processes that define yield consequences, using a sorghum model. This will involve unravelling the complex relationship between leaf gas exchange properties and crop field performance. Through a unique combination of model prediction and gene editing to target the photosynthetic pathway and stomata, the research is expec ....Model-directed bioengineering strategy for accelerating crop improvement. The aim is to use an advanced mechanistic crop model to investigate the interacting plant physiological processes that define yield consequences, using a sorghum model. This will involve unravelling the complex relationship between leaf gas exchange properties and crop field performance. Through a unique combination of model prediction and gene editing to target the photosynthetic pathway and stomata, the research is expected to gain a deep mechanistic understanding of the underpinning processes and drive the transfer of promising bioengineering targets into crops. The research is expected to discover new avenues for crop improvement, and significantly benefit crop breeding and food production capacity.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE160101570
Funder
Australian Research Council
Funding Amount
$352,000.00
Summary
Inducible hyper-expression as a tool for metabolic engineering. This project aims to develop methods to improve plant natural products yields and diversify the products manufactured from a wide array of plant species. Valuable plant metabolites, including chemotherapeutics and opiates, are usually synthesised in minute amounts and can be so complex they can’t be chemically manufactured, limiting their use and affordability. This project aims to develop an inducible system that confers hyper-elev ....Inducible hyper-expression as a tool for metabolic engineering. This project aims to develop methods to improve plant natural products yields and diversify the products manufactured from a wide array of plant species. Valuable plant metabolites, including chemotherapeutics and opiates, are usually synthesised in minute amounts and can be so complex they can’t be chemically manufactured, limiting their use and affordability. This project aims to develop an inducible system that confers hyper-elevated levels of gene expression and independent control of multiple genes involved in metabolite synthesis in the same host. This technology is expected to enable flexible multi-trait bio-factories to be developed.Read moreRead less
The sponge genome project and the evolution of multicellularity: using comparative genomics and developmental biology to reconstruct the first animals. Recently the entire genome from a living fossil - a sponge from the Great Barrier Reef - was sequenced (jointly supported by the ARC and US Department of Energy). As this genome is assembled and analysed, many of the fundamental biological processes that underlie the construction and evolution of all animals, including humans, will be revealed. ....The sponge genome project and the evolution of multicellularity: using comparative genomics and developmental biology to reconstruct the first animals. Recently the entire genome from a living fossil - a sponge from the Great Barrier Reef - was sequenced (jointly supported by the ARC and US Department of Energy). As this genome is assembled and analysed, many of the fundamental biological processes that underlie the construction and evolution of all animals, including humans, will be revealed. In addition, sponge genomics will fuel innovations in medicine and biotechnology. Specifically, sponges are renowned for their capacity to synthesise bioactive compounds used in drug development, and high-grade silica used for semi-conductor construction. This project will identify the gene networks controlling these biosynthetic processes.Read moreRead less
Early animal evolution: reconstructing the last common metazoan ancestor through the analysis of developmental and structural genes in sponges. All animals, from the simplest invertebrates to humans, arose from a common ancestor. Reconstruction of this ancestor requires the comparison of metazoan developmental genetic architectures. Here we contribute to this pursuit by studying a phylogenetically and biological appropriate metazoan system - marine sponge embryos and larvae. Using high-throughp ....Early animal evolution: reconstructing the last common metazoan ancestor through the analysis of developmental and structural genes in sponges. All animals, from the simplest invertebrates to humans, arose from a common ancestor. Reconstruction of this ancestor requires the comparison of metazoan developmental genetic architectures. Here we contribute to this pursuit by studying a phylogenetically and biological appropriate metazoan system - marine sponge embryos and larvae. Using high-throughput gene profiling techniques, we will analyse the developmental genetics underlying the sponge body plan. Commonalities shared between sponges and more sophisticated animals are likely to have been present in the "genetic toolkit" of the most ancient metazoan ancestor and, as such, is the genetic foundation from which all animal biodiversity arose.Read moreRead less
Does developmental noise have an epigenetic basis? One's ultimate phenotype is the result of a combination of genotype and environment, and includes a poorly understood component termed ?developmental noise?. The molecular basis of developmental noise remains unknown, but it appears to be established in early development and to be retained for the life of the organism. We propose that the molecular basis of developmental noise is the epigenetic state of the genome. The stochastic nature of th ....Does developmental noise have an epigenetic basis? One's ultimate phenotype is the result of a combination of genotype and environment, and includes a poorly understood component termed ?developmental noise?. The molecular basis of developmental noise remains unknown, but it appears to be established in early development and to be retained for the life of the organism. We propose that the molecular basis of developmental noise is the epigenetic state of the genome. The stochastic nature of the establishment of epigenetic state, combined with its heritability during mitosis, provides all the essential components for developmental noise. If our hypothesis proves correct, our work will have a major impact on the understanding of one of the most basic concepts in genetics.Read moreRead less
Using genomic information to understand and improve the quality of the Australian South Sea Pearl. Recently, mass-produced freshwater pearls from Asia have markedly increased in quality and begun to compromise our prestigious South Sea Pearl market. This presents Australian pearlers with a challenge to maintain market identity by improving their pearl quality and consistency. By adding genomics to the existing Australian pearl industry armoury we will help not only to maintain the premier positi ....Using genomic information to understand and improve the quality of the Australian South Sea Pearl. Recently, mass-produced freshwater pearls from Asia have markedly increased in quality and begun to compromise our prestigious South Sea Pearl market. This presents Australian pearlers with a challenge to maintain market identity by improving their pearl quality and consistency. By adding genomics to the existing Australian pearl industry armoury we will help not only to maintain the premier position of the Australian South Sea Pearl in the market, but also to move it further ahead. Knowledge of the genetics of pearl formation will advance a range of hatchery and farm practices, such as selective breeding and pearl grafting, which in turn can enhance farm-based operations and the remote communities that support them.Read moreRead less
Enhancing the Pearl: understanding the molecular genetics of pearl lustre, colour and size. Australia produces some of the most valuable pearls in the world. However recently the world has been flooded with high quality mass-produced freshwater pearls. This has begun to eat into our prestigious South Sea Pearl market and now presents Australian pearlers with a challenge to maintain market identity. We propose to respond this challenge by improving the quality and consistency of the cultured Sou ....Enhancing the Pearl: understanding the molecular genetics of pearl lustre, colour and size. Australia produces some of the most valuable pearls in the world. However recently the world has been flooded with high quality mass-produced freshwater pearls. This has begun to eat into our prestigious South Sea Pearl market and now presents Australian pearlers with a challenge to maintain market identity. We propose to respond this challenge by improving the quality and consistency of the cultured South Sea Pearl through gaining a detailed understanding of how the oyster genetically controls pearl biofabrication - focusing on pearl colour, size and lustre. This information will identify pearl oysters that are a source of high-quality donor mantle tissue and that can be used in selective breeding programs.Read moreRead less