Using modelling to optimise the structure and function of crop root systems for dryland agriculture. The crop root systems are poorly suited to harsh conditions in Australian agriculture, especially as climate is getting drier. Poor water-use efficiency lowers crop yields below the potential yield; moreover, unutilised water and nutrients contribute to environmental problems, eg salinity and eutrophication. This project will use our simulation model to develop computer-aided design of 3-D root s ....Using modelling to optimise the structure and function of crop root systems for dryland agriculture. The crop root systems are poorly suited to harsh conditions in Australian agriculture, especially as climate is getting drier. Poor water-use efficiency lowers crop yields below the potential yield; moreover, unutilised water and nutrients contribute to environmental problems, eg salinity and eutrophication. This project will use our simulation model to develop computer-aided design of 3-D root structure and function (water and nutrient uptake) tailored to particular environments. Modelling will also link suitable root traits to genetic markers in well-characterised lupin germplasm. The blueprint developed here will be adaptable to other crops. The project will enhance breeding for increased water- and nutrient-use efficiency.Read moreRead less
Protecting the Australian chickpea industry through knowledge of the current Ascochyta rabiei fungal population and risk to resistance breeding strategies. Australian chickpea is highly vulnerable to epidemics of Ascochyta blight, which may cause total crop failure. This project will help to maintain Australia's position as a major global chickpea producer through maximising the life span of current resistance genes to A. rabiei. and determining the applicability of other potential resistance so ....Protecting the Australian chickpea industry through knowledge of the current Ascochyta rabiei fungal population and risk to resistance breeding strategies. Australian chickpea is highly vulnerable to epidemics of Ascochyta blight, which may cause total crop failure. This project will help to maintain Australia's position as a major global chickpea producer through maximising the life span of current resistance genes to A. rabiei. and determining the applicability of other potential resistance sources. The knowledge that will be generated regarding the pathogen's potential to overcome host resistance is imperative for developing future disease management strategies, especially since more aggressive isolates exist outside Australia. The project findings will feed directly into the National Australian Chickpea Breeding Program.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0561161
Funder
Australian Research Council
Funding Amount
$110,000.00
Summary
Joint Facility for Genome Analysis of Nutrient Transport Proteins. The joint facility for genome analysis of nutrient transport proteins is a new initiative between the University of Adelaide, the Australian Centre for Plant Functional Genomics, and the University of Western Australia to use a high throughput Xenopus oocyte expression system to screen plant cDNA/cRNA collections for genes encoding nutrient transport proteins. The facility will also provide a platform to rapidly accelerate our p ....Joint Facility for Genome Analysis of Nutrient Transport Proteins. The joint facility for genome analysis of nutrient transport proteins is a new initiative between the University of Adelaide, the Australian Centre for Plant Functional Genomics, and the University of Western Australia to use a high throughput Xenopus oocyte expression system to screen plant cDNA/cRNA collections for genes encoding nutrient transport proteins. The facility will also provide a platform to rapidly accelerate our present capacity for Xenopus oocyte expression analysis of nutrient transport proteins. This facility will greatly aid our current research quantum in this field and allow for new discoveries related to nutrient transport in plants.Read moreRead less
The role of plant hormones in arbuscular mycorrhizal symbiosis. The vast majority of plant species can form a beneficial symbiosis with specialised soil fungi, an association that can enhance the uptake of nutrients from the soil, improve tolerance to drought and disease and minimise soil erosion. An understanding of how plants establish and regulate this important symbiosis has the potential to contribute to the development of productive and sustainable farming systems by making efficient use o ....The role of plant hormones in arbuscular mycorrhizal symbiosis. The vast majority of plant species can form a beneficial symbiosis with specialised soil fungi, an association that can enhance the uptake of nutrients from the soil, improve tolerance to drought and disease and minimise soil erosion. An understanding of how plants establish and regulate this important symbiosis has the potential to contribute to the development of productive and sustainable farming systems by making efficient use of the limited water resources, reducing soil erosion, reducing reliance on pesticides and fertilisers and producing more nutritious fruits, vegetables and grains.Read moreRead less
Fingerprinting the soil microbial metagenome. The understanding of the impact of current farming systems on soil biology is in its infancy. Technology previously used to examine soil biology only investigates a very small percentage of all soil organisms. We will use an innovative new technology (DArT) to rapidly gain an overview of all soil microbial biodiversity. We will then evaluate the impact of agricultural practices on that biodiversity, firstly based on our long term trial site exhibiti ....Fingerprinting the soil microbial metagenome. The understanding of the impact of current farming systems on soil biology is in its infancy. Technology previously used to examine soil biology only investigates a very small percentage of all soil organisms. We will use an innovative new technology (DArT) to rapidly gain an overview of all soil microbial biodiversity. We will then evaluate the impact of agricultural practices on that biodiversity, firstly based on our long term trial site exhibiting common farming practices, and then by a broader regional survey. Our longer term goal is to find microbiological indicators of healthy soil through a vastly improved ability to determine a wide range of beneficial and disease organisms to identify sustainable farming practices.Read moreRead less
Genome Approaches to Investigate Metabolic Coordination in Plant Cells. Metabolism of C and N in legume nodules requires interaction between the symbiotic bacteria and plant organelles, particularly metabolism in plastids and mitochondria. Fixed N is assimilated through the de novo synthesis of purines in both plastids and mitochondria. However, each of the nine pathway enzymes is encoded by a single gene, indicating each protein is targeted to both organelles. Purine metabolism will provide ....Genome Approaches to Investigate Metabolic Coordination in Plant Cells. Metabolism of C and N in legume nodules requires interaction between the symbiotic bacteria and plant organelles, particularly metabolism in plastids and mitochondria. Fixed N is assimilated through the de novo synthesis of purines in both plastids and mitochondria. However, each of the nine pathway enzymes is encoded by a single gene, indicating each protein is targeted to both organelles. Purine metabolism will provide a model to assess the more general occurrence of dual-targeted proteins in plants. The aim is to identify and eventually exploit the signalling mechanism(s) that mediate communication between plastids and mitochondria.Read moreRead less
Systemic control of nodule proliferation. We aim to clone and characterize the functions of the supernodulation (NTS-1) locus of soybean using positional cloning and functional genomics approaches. Supernodulation fascinatingly results from a mutant Nts-1 gene functioning in the shoot, although the phenotype is expressed as excessive nodule proliferation in the root. The cloned gene will be used to monitor expression changes after inoculation with Bradyrhizobium, treatment with nitrate, nod-fac ....Systemic control of nodule proliferation. We aim to clone and characterize the functions of the supernodulation (NTS-1) locus of soybean using positional cloning and functional genomics approaches. Supernodulation fascinatingly results from a mutant Nts-1 gene functioning in the shoot, although the phenotype is expressed as excessive nodule proliferation in the root. The cloned gene will be used to monitor expression changes after inoculation with Bradyrhizobium, treatment with nitrate, nod-factor, xylem exudates and phytohormones. We will use RT-PCR, in situ hybridisation and reporter gene expression in transgenic plants. Microarray analysis of soybean ESTs (4200 arrayed) will analyse concurrent gene expression changes in both root and shoot.Read moreRead less
FUNCTIONAL GENOMICS OF PLANT MITOCHONDRIA: THEIR ROLE IN DEVELOPMENT, OXIDATIVE STRESS AND PLANT DEFENSE. Crops encounter many situations in their environment which place them under stress. Reactive oxygen molecules produced in these situations act as messengers to trigger defence mechanisms but also cause cellular damage. Mitochondria are the subcellular compartments involved in energy production and are essential for plant development and growth. However, they also have been implicated in th ....FUNCTIONAL GENOMICS OF PLANT MITOCHONDRIA: THEIR ROLE IN DEVELOPMENT, OXIDATIVE STRESS AND PLANT DEFENSE. Crops encounter many situations in their environment which place them under stress. Reactive oxygen molecules produced in these situations act as messengers to trigger defence mechanisms but also cause cellular damage. Mitochondria are the subcellular compartments involved in energy production and are essential for plant development and growth. However, they also have been implicated in the response of plants to stress and pathogen attack, and in production of reactive oxygen molecules. This proposal seeks to investigate how mitochondria are involved in these processes, using the latest plant genome information. Potential outcomes include crops better able to cope with environmental stress.Read moreRead less
Symbiotic transport proteins in legumes. Some plants form a symbiosis with soil bacteria (rhizobia) that convert atmospheric nitrogen to ammonia which is then supplied to the plant. This enables legumes to grow without application of nitrogen-based fertilizer, avoiding environmental problems such as run-off and land degradation, thereby contributing to sustainable agriculture practise. We will investigate the interactions between plant and rhizobia, focusing on identifying genes and proteins wh ....Symbiotic transport proteins in legumes. Some plants form a symbiosis with soil bacteria (rhizobia) that convert atmospheric nitrogen to ammonia which is then supplied to the plant. This enables legumes to grow without application of nitrogen-based fertilizer, avoiding environmental problems such as run-off and land degradation, thereby contributing to sustainable agriculture practise. We will investigate the interactions between plant and rhizobia, focusing on identifying genes and proteins which govern nutrient exchange between the partners and development of the special structures in the roots that house the bacteria. Subsequent manipulation of these genes and proteins may allow us to identify control points and enhance nitrogen fixation.
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Molecular analysis of the symbiotic interface of nitrogen-fixing legumes. Some legumes form a symbiosis with soil bacteria (rhizobia) that convert atmospheric nitrogen to ammonia which is then supplied to the plant. This enables legumes to grow without application of nitrogen-based fertilizer, avoiding environmental problems such as run-off and land degradation, thereby contributing to sustainable agriculture practise. We will investigate the interactions between plant and rhizobia, focusing on ....Molecular analysis of the symbiotic interface of nitrogen-fixing legumes. Some legumes form a symbiosis with soil bacteria (rhizobia) that convert atmospheric nitrogen to ammonia which is then supplied to the plant. This enables legumes to grow without application of nitrogen-based fertilizer, avoiding environmental problems such as run-off and land degradation, thereby contributing to sustainable agriculture practise. We will investigate the interactions between plant and rhizobia, focusing on identifying genes and proteins which govern nutrient exchange between the partners and development of the special structures in the roots that house the bacteria. Subsequent manipulation of these genes and proteins may allow us to identify control points and enhance nitrogen fixation.Read moreRead less