Evolving rates: foundations for the next generation of molecular clocks. This project aims to investigate the causes and consequences of variation in rate of DNA sequence evolution across three kingdoms of life. Dates estimated from DNA sequences have a wide range of applications, including evolutionary biology, conservation prioritisation and epidemiology. These methods rely on accurate rate estimates, but current models lack information about the biological drivers of rates of genomic change. ....Evolving rates: foundations for the next generation of molecular clocks. This project aims to investigate the causes and consequences of variation in rate of DNA sequence evolution across three kingdoms of life. Dates estimated from DNA sequences have a wide range of applications, including evolutionary biology, conservation prioritisation and epidemiology. These methods rely on accurate rate estimates, but current models lack information about the biological drivers of rates of genomic change. This project will test reliability of current methods, identify potentially misleading estimates of disease origin or conservation priorities, and develop new approaches with empirically-informed models of rate change.Read moreRead less
New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely nove ....New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely novel way to test hypotheses of microsatellite diversity. Our research is inter-disciplinary in that we will bridge the gap between molecular phylogenetics and molecular evolution and in so doing make a major advancement in this emerging field.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100544
Funder
Australian Research Council
Funding Amount
$344,682.00
Summary
The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the ....The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the primary evolutionary forces on the genome, and test these methods using simulations. The new framework of genomic analysis will be disseminated through an intuitive software package, and will be used to estimate with unprecedented confidence the history of diversification and genome evolution of marsupials.Read moreRead less
How are visual gene pathways lost and restored during reptile evolution? This project aims to investigate how complex traits are lost during evolution, and once lost if they can be regained. The project will use the diverse visual systems of snakes and lizards to shed light on the process of gene loss in degenerative lineages, and discover the mechanisms that compensate for gene losses in taxa with secondarily evolved visual capabilities- providing a case of evolutionary re-innovation in complex ....How are visual gene pathways lost and restored during reptile evolution? This project aims to investigate how complex traits are lost during evolution, and once lost if they can be regained. The project will use the diverse visual systems of snakes and lizards to shed light on the process of gene loss in degenerative lineages, and discover the mechanisms that compensate for gene losses in taxa with secondarily evolved visual capabilities- providing a case of evolutionary re-innovation in complex traits.Read moreRead less
Australian Laureate Fellowships - Grant ID: FL100100183
Funder
Australian Research Council
Funding Amount
$2,168,370.00
Summary
Biological adaptation under natural and anthropogenic conditions. This project covers all four national priority areas. Nature abounds with conflicts between what is good for the individual or a larger entity (a population, a society, or a species). Researching them will explain why populations adapt or fail to adapt to novel conditions (e.g., climate change) and predict when interventions are beneficial. Similar rules govern the spread of invasive species. Even health problems, e.g., new virule ....Biological adaptation under natural and anthropogenic conditions. This project covers all four national priority areas. Nature abounds with conflicts between what is good for the individual or a larger entity (a population, a society, or a species). Researching them will explain why populations adapt or fail to adapt to novel conditions (e.g., climate change) and predict when interventions are beneficial. Similar rules govern the spread of invasive species. Even health problems, e.g., new virulent strains of human, animal or plant diseases, require such evolutionary thinking. Cutting-edge mathematical tools also prepare Australians for an era in the near future where genomic data are so cheap to acquire that training in complex mathematical and logical analysis becomes a factor limiting scientific progress.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100491
Funder
Australian Research Council
Funding Amount
$418,386.00
Summary
Linking genomic changes to the generation of biodiversity. This project aims to provide a suite of theories, methods and software to enhance our understanding on how the generation of variation at molecular level is linked to the generation of species richness at lineage level. This new approach tests various ways that molecular changes are manifested as patterns of diversification, as revealed by genomic data analysed at the lineage level in phylogenetic studies. Expected outcomes of this proje ....Linking genomic changes to the generation of biodiversity. This project aims to provide a suite of theories, methods and software to enhance our understanding on how the generation of variation at molecular level is linked to the generation of species richness at lineage level. This new approach tests various ways that molecular changes are manifested as patterns of diversification, as revealed by genomic data analysed at the lineage level in phylogenetic studies. Expected outcomes of this project add to a growing body of evolutionary theory and provide practical phylogenetic tools for future analyses. These should benefit Australia by improving our understanding on the formation of Australia’s biodiversity hotspots.Read moreRead less
The evolution of specialised orchid pollination and its reversibility. This project aims to determine the changes in key floral volatile compounds underpinning pollination transitions, identify their molecular basis, and understand the ecological processes favouring reversals away from extreme specialisation. By focusing on pollination of sexually deceptive Australian orchids, this project would be the first to determine the molecular, chemical and behavioural basis of evolutionary reversals to ....The evolution of specialised orchid pollination and its reversibility. This project aims to determine the changes in key floral volatile compounds underpinning pollination transitions, identify their molecular basis, and understand the ecological processes favouring reversals away from extreme specialisation. By focusing on pollination of sexually deceptive Australian orchids, this project would be the first to determine the molecular, chemical and behavioural basis of evolutionary reversals to more generalised strategies in a group of plants facing high risk of pollinator extinction. The expected outcome, a mechanistic understanding of how pollination transitions occur, would be internationally ground-breaking, and provide crucial insights to protect this diverse but highly threatened group of plants.Read moreRead less
Drivers of phenotypic evolution in a vulnerable alpine ecosystem. This project aims to deliver a comprehensive, integrated understanding of the capacity for resilience and drivers of response of highly vulnerable alpine species and communities to climate change. The project aims to determine how communities of interacting alpine plants, soil invertebrates and microbes can cope with or evolve to novel climatic conditions. The mountains are water towers critical to power supply and Australia's agr ....Drivers of phenotypic evolution in a vulnerable alpine ecosystem. This project aims to deliver a comprehensive, integrated understanding of the capacity for resilience and drivers of response of highly vulnerable alpine species and communities to climate change. The project aims to determine how communities of interacting alpine plants, soil invertebrates and microbes can cope with or evolve to novel climatic conditions. The mountains are water towers critical to power supply and Australia's agricultural productivity. Understanding physiological tolerance and the potential for rapid evolutionary responses of plants, animals and communities is necessary to predict impacts of climate change on the future productivity of the vulnerable Australian Alps and to provide novel options for climate adaptation. Read moreRead less
Multi-trait plasticity in response to a changing climate. This project aims to understand the effect of climate change on natural populations. Phenotypic plasticity (the ability to change phenotype with environment) determines natural populations’ immediate response to environmental change. However, studies of plasticity frequently rely on simplifying assumptions, and understanding the genomic and epigenomic mechanisms underlying plasticity is only just emerging. This project will combine a fine ....Multi-trait plasticity in response to a changing climate. This project aims to understand the effect of climate change on natural populations. Phenotypic plasticity (the ability to change phenotype with environment) determines natural populations’ immediate response to environmental change. However, studies of plasticity frequently rely on simplifying assumptions, and understanding the genomic and epigenomic mechanisms underlying plasticity is only just emerging. This project will combine a fine-scale temperature-manipulation experiment with genomic and multivariate statistical analyses of a native Australian alpine plant. The intended outcome is a comprehensive analysis of whether multi-trait phenotypic plasticity is adaptive; whether it can evolve; and the epigenomic mechanisms that drive it. The project will predict the likely effect of temperature change on alpine plants, and so generate information internationally relevant to the management of populations adapting to climate change and locally relevant to the conservation of Australian montane flora.Read moreRead less
Evolution in a changing environment. Climate change is having dramatic effects on wild animal populations. This project will investigate how and why these effects occur, and whether populations will be able to evolve to adapt to a changing environment.