Kernel methods for the analysis of whole bacterial genomes. This project addresses the fundamental scientific problem of the identification of regulatory regions and specific promoters within bacterial genomes, with a focus upon two organisms of great social, economic and bioterrism significance. From the machine learning perspective, the project will be the first to produce a kernel-based approach directly tailored to the problem of the detection of regulatory regions. The methods developed wil ....Kernel methods for the analysis of whole bacterial genomes. This project addresses the fundamental scientific problem of the identification of regulatory regions and specific promoters within bacterial genomes, with a focus upon two organisms of great social, economic and bioterrism significance. From the machine learning perspective, the project will be the first to produce a kernel-based approach directly tailored to the problem of the detection of regulatory regions. The methods developed will be made available through a straightforward web-based interface, allowing biologists throughout the world to utilize the approach as a tool to be applied to a progressively widening class of bacterial genomes, and even to eukaryotes. Read moreRead less
Metagenomics and the genetic basis of ecology and evolution of communities - complex microbial communities in industrial processes as excellent paradigms. Benefits accrue on two fronts: the international reputation of Australian science in contributing significantly to two new, challenging and highly topical questions in ecology and evolution, and in pioneering a route to better efficiency and control of an important industrial process. Wastewater is rich in organic phosphorus that is damaging t ....Metagenomics and the genetic basis of ecology and evolution of communities - complex microbial communities in industrial processes as excellent paradigms. Benefits accrue on two fronts: the international reputation of Australian science in contributing significantly to two new, challenging and highly topical questions in ecology and evolution, and in pioneering a route to better efficiency and control of an important industrial process. Wastewater is rich in organic phosphorus that is damaging to the environment if untreated, but current understanding enables only rudimentary control of the microbial communities that are the basis of the treatment process. The work will provide unprecedented insight into the mechanisms underpinning the dynamics of phosphorus absorbing microbes in industrial facilities by integrating from gene-to-ecosystem.Read moreRead less
EXTRACELLULAR ELECTRON TRANSFER IN BIO-ELECTROCHEMICAL SYSTEMS. Water quality and supply are critical issues in Australia. This project investigates the role of bacteria in maintaining a good freshwater quality, and the influence of environmental parameters on this. It will enable us to assess the role of bacteria on greenhouse gas emissions in a variety of environments. As a result, processes can be developed to alleviate high emissions while simultaneously producing green energy. The proteomic ....EXTRACELLULAR ELECTRON TRANSFER IN BIO-ELECTROCHEMICAL SYSTEMS. Water quality and supply are critical issues in Australia. This project investigates the role of bacteria in maintaining a good freshwater quality, and the influence of environmental parameters on this. It will enable us to assess the role of bacteria on greenhouse gas emissions in a variety of environments. As a result, processes can be developed to alleviate high emissions while simultaneously producing green energy. The proteomics study will deliver, aside from knowledge, redox proteins which find their way to diagnostics and fuel cells. This project substantiates Australia based research at the forefront and enables international anchoring of our expertise.Read moreRead less
Understanding the dynamics of malaria infection. Malaria infection kills around one million patients each year and this project involves an interdisciplinary team who will directly measure how the parasite grows and is killed by the immune system. A better understanding of parasite growth and control will help develop better drugs therapy and vaccination for this important infection.
Interspecies electron transfer in biotechnology. While the project is fundamental in nature, it has direct technological gains to a wide range of biotechnology processes, and in particular, mixed culture anaerobic biotechnology. It therefore promotes Australian bioenergy, biofuel, and commodity renewable chemicals industries, and contributes to the national research priority of an Environmentally Sustainable Australia. In addition, this is a fast moving, high impact area that will demonstrate e ....Interspecies electron transfer in biotechnology. While the project is fundamental in nature, it has direct technological gains to a wide range of biotechnology processes, and in particular, mixed culture anaerobic biotechnology. It therefore promotes Australian bioenergy, biofuel, and commodity renewable chemicals industries, and contributes to the national research priority of an Environmentally Sustainable Australia. In addition, this is a fast moving, high impact area that will demonstrate excellence in Australian research on an international scale. The exciting multidisciplinary nature of the project, excellent management team, and high-class partners will also provide for an excellent experience for the three PhD candidates to be educated through the project.Read moreRead less
New drugs for malaria that target histone deacetylases. There is no vaccine for malaria and current drugs are failing, contributing to millions of malaria-related deaths each year. The aim of this project is to develop new drugs to address this significant global health issue. This project will focus on drugs that act in novel ways to existing malaria drugs by targeting enzymes that are involved in altering gene expression in the parasite. These kinds of enzymes are recognised drug targets in ot ....New drugs for malaria that target histone deacetylases. There is no vaccine for malaria and current drugs are failing, contributing to millions of malaria-related deaths each year. The aim of this project is to develop new drugs to address this significant global health issue. This project will focus on drugs that act in novel ways to existing malaria drugs by targeting enzymes that are involved in altering gene expression in the parasite. These kinds of enzymes are recognised drug targets in other diseases such as cancer. The outcomes of this project will include advances in malaria drug development that build on Australian drug discovery efforts, seeding further funding opportunities from industry and other sources and contributing research training and capacity building in Australia.Read moreRead less
Enhanced coral stress tolerance via manipulation of prokaryotic symbionts. The project aims to develop a novel approach to improve environmental stress tolerance in corals. Coral reefs are under threat from a range of stressors that have led to massive declines in coral cover and health worldwide. There is now great concern that the rate of environmental change is outpacing the natural capacity of corals to acclimatise, adapt and survive. Although it is important to address the root causes of cl ....Enhanced coral stress tolerance via manipulation of prokaryotic symbionts. The project aims to develop a novel approach to improve environmental stress tolerance in corals. Coral reefs are under threat from a range of stressors that have led to massive declines in coral cover and health worldwide. There is now great concern that the rate of environmental change is outpacing the natural capacity of corals to acclimatise, adapt and survive. Although it is important to address the root causes of climate change, a focus on strategies to mitigate its impacts is also required. This project explores the potential to augment the capacity of corals to tolerate stress through the manipulation of their associated prokaryotic communities. This project may result in novel coral reef restoration approaches.Read moreRead less
In-Vitro Production of Baculovirus Biopesticides - A Systems Biology Approach. This project has the potential to develop an in-vitro production process that can produce large quantities of Baculoviruses at costs comparable to selective chemicals. This could transform agriculture allowing farmers to choose an insect control option that is both safe and efficacious to use as well as economically and environmentally superior to chemicals, and less controversial than transgenic plants. This outcome ....In-Vitro Production of Baculovirus Biopesticides - A Systems Biology Approach. This project has the potential to develop an in-vitro production process that can produce large quantities of Baculoviruses at costs comparable to selective chemicals. This could transform agriculture allowing farmers to choose an insect control option that is both safe and efficacious to use as well as economically and environmentally superior to chemicals, and less controversial than transgenic plants. This outcome would enhance Australia's reputation in the animal cell technology field (related technology is used to produce protein pharmaceutical products), and will earn significant export dollars through licensing out of the technology or through large scale manufacturing and export of the product itself. Read moreRead less
Development of a safe and immunogenic anti-chlamydia vaccine for the koala. Many koala populations are under threat of extinction from chlamydial disease.The project will develop a chlamydial vaccine and conduct trials in several wild koala populations for safety and effectiveness.
Ross River virus - identification of virulence determinants in clinical isolates from across Australia. In Australia, Ross River virus (RRV) is the most common insect borne virus that affects human health. There were more than 60,000 confirmed cases of RRV between 1993 and 2008. While not fatal, the disease is responsible for significant morbidity that has both social and economic costs for the individual, their family and the community. The project has several national benefits. It will elucida ....Ross River virus - identification of virulence determinants in clinical isolates from across Australia. In Australia, Ross River virus (RRV) is the most common insect borne virus that affects human health. There were more than 60,000 confirmed cases of RRV between 1993 and 2008. While not fatal, the disease is responsible for significant morbidity that has both social and economic costs for the individual, their family and the community. The project has several national benefits. It will elucidate whether there is any association between RRV strain and the severity of human disease. It will also identify viral markers that could assist public health officials in determining likely disease outcomes of outbreaks and could provide new avenues for the design of antiviral strategies.Read moreRead less