How evolution is constrained by trade-offs between the multiplication and survival of organisms. The negative correlation between reproduction (production of large numbers of progeny) and survival (resistance to external challenges) is a crucial trade-off that limits the evolution of perfect organisms. Such trade-offs are extremely difficult to study in closely controlled experiments because of the complexities in biological organisation and life-cycles. This project will explore trade-offs usin ....How evolution is constrained by trade-offs between the multiplication and survival of organisms. The negative correlation between reproduction (production of large numbers of progeny) and survival (resistance to external challenges) is a crucial trade-off that limits the evolution of perfect organisms. Such trade-offs are extremely difficult to study in closely controlled experiments because of the complexities in biological organisation and life-cycles. This project will explore trade-offs using a novel synthetic biology strategy. Genes in bacteria will be engineered to produce strains with a range of fixed but different trade-off settings. The strain sets will allow unprecedented analysis of reproduction-survival trade-offs and testing of important models of how trade-offs control fitness and evolutionary outcomes.Read moreRead less
Tracking the molecular dynamics of adaptation with horizontal gene transfer. This project aims to track the dynamics of adaptation with gene exchange by building the first experimental evolution model that can directly observe this process. The acquisition of genes from other strains and species (horizontal gene transfer) frequently underlies bacterial adaptation, but it is unknown how this occurs. This project aims to shift understanding of how microbial populations respond to environmental cha ....Tracking the molecular dynamics of adaptation with horizontal gene transfer. This project aims to track the dynamics of adaptation with gene exchange by building the first experimental evolution model that can directly observe this process. The acquisition of genes from other strains and species (horizontal gene transfer) frequently underlies bacterial adaptation, but it is unknown how this occurs. This project aims to shift understanding of how microbial populations respond to environmental challenges. There are significant benefits to be gained from understanding how microbes adapt in response to climate change and the widespread application of antibiotics, given that microbial populations form intimate associations with humans and sustain all of the world’s ecosystems.Read moreRead less
Experimental co-evolution of Yeast and E. coli. This project aims to measure the rates and genetic mechanisms of adaptation for individual species within a microbial community. Expected outcomes of this interdisciplinary project include the first genomic and phenotypic dataset of a model microbial community, and novel tools for the analysis of meta-genomic datasets. This project has the potential to transform understanding of microbial adaptation.
Revealing the structure, evolution and sensitivity of symbioses in basal metazoa. This project will explore the complex interactions between each component of the sponge holobiont (virus, bacteria, sponge) during thermal stress. This will also provide the first molecular assessment of sponge viruses and provide insights into how sponges may adapt to a changing climate.
The dynamics of evolution: How horizontal gene transfer drives the diversification and adaptation of complex, bacterial communities. The genetic exchange between populations is a prerequisite for the long-term evolution of bacteria, however its short-term dynamics are largely unexplored. This project aims to define the temporal dynamics of gene transfer and how it shapes the genetic composition of entire bacterial communities. Using innovative DNA sequencing technologies and bioinformatics, This ....The dynamics of evolution: How horizontal gene transfer drives the diversification and adaptation of complex, bacterial communities. The genetic exchange between populations is a prerequisite for the long-term evolution of bacteria, however its short-term dynamics are largely unexplored. This project aims to define the temporal dynamics of gene transfer and how it shapes the genetic composition of entire bacterial communities. Using innovative DNA sequencing technologies and bioinformatics, This project aims to offer a significant new understanding of the short-term diversification of communities and how different evolutionary forces shape bacterial function. It will show how bacterial systems can adapt to new environmental conditions and the effect on essential ecosystem functions.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE150101574
Funder
Australian Research Council
Funding Amount
$368,583.00
Summary
Evolution and Adaptation of the Human Microbiome. The bacteria within the human body (microbiome) are vital to human health, and alterations to these intricate microbial communities are now associated with disease. Using ancient DNA, this project aims to examine the evolutionary history of the human microbiome by exploring ancient bacterial communities preserved in calcified dental plaque (calculus) over the past 10 000 years. This will provide valuable information that reveals how these bacteri ....Evolution and Adaptation of the Human Microbiome. The bacteria within the human body (microbiome) are vital to human health, and alterations to these intricate microbial communities are now associated with disease. Using ancient DNA, this project aims to examine the evolutionary history of the human microbiome by exploring ancient bacterial communities preserved in calcified dental plaque (calculus) over the past 10 000 years. This will provide valuable information that reveals how these bacterial communities respond to alterations in human diet, environment, culture, and location. By monitoring changes in a natural modern system, this project aims to determine how these microbial communities established themselves within the human body, elucidating how the microbiome may respond in the future.Read moreRead less
Stories from the past: the impact of industrialisation on the human microbiome. This project aims to explore the history and origin of ‘Industrial’ diseases such as obesity, diabetes, heart disease and autism. Non-communicable, ‘Industrial’ diseases are rising at an alarming rate in Australia, and changes to the beneficial microorganisms within the human body (microbiota) may be to blame. This project will explore how human microbiota have changed over the past 100 years in response to cultural, ....Stories from the past: the impact of industrialisation on the human microbiome. This project aims to explore the history and origin of ‘Industrial’ diseases such as obesity, diabetes, heart disease and autism. Non-communicable, ‘Industrial’ diseases are rising at an alarming rate in Australia, and changes to the beneficial microorganisms within the human body (microbiota) may be to blame. This project will explore how human microbiota have changed over the past 100 years in response to cultural, environmental, and lifestyle factors linked with Industrialisation. This approach will allow stories from the past to inform modern medical treatment strategies and public health decisions in the future. The project will identify changes in environment, diet, hygiene, and medicine that have altered human microbiota in the past and sparked the Industrial disease epidemic in Australia today.Read moreRead less
Evolution of the marsupial gut microbiome and adaptation to eucalypt toxins. Eucalyptus leaves comprise all or part of the diet of some marsupials including koalas. Gut microbiota assist in the ability of these folivores to tolerate eucalyptus toxins although present understanding of this process is rudimentary. This project aims to use culture-independent molecular methods to identify and characterise gut populations involved in phytochemical detoxification by comparative analysis with diprotod ....Evolution of the marsupial gut microbiome and adaptation to eucalypt toxins. Eucalyptus leaves comprise all or part of the diet of some marsupials including koalas. Gut microbiota assist in the ability of these folivores to tolerate eucalyptus toxins although present understanding of this process is rudimentary. This project aims to use culture-independent molecular methods to identify and characterise gut populations involved in phytochemical detoxification by comparative analysis with diprotodont relatives that are not capable of digesting eucalyptus leaves. This will highlight evolutionary convergence of gut microbiomes in toxic folivores and reveal mechanisms by which microorganisms respond to and metabolise eucalypt toxins. A broader evolutionary context of marsupial digestive function will assist in ongoing conservation efforts.Read moreRead less
How do Microbes Grow in High Salt at Very Cold Temperatures. The proposed research aims to define mechanisms of survival and speciation that underpin the capacity of a novel group of Antarctic microorganisms to evolve dominance in their very cold (-20 degrees Celsius) and very salty environment. Most (~85 per cent) of the Earth's biosphere is cold (<5 degrees Celsius), and yet contains a rich diversity of microorganisms of which we know little. The uniqueness and sensitivity of Antarctica partic ....How do Microbes Grow in High Salt at Very Cold Temperatures. The proposed research aims to define mechanisms of survival and speciation that underpin the capacity of a novel group of Antarctic microorganisms to evolve dominance in their very cold (-20 degrees Celsius) and very salty environment. Most (~85 per cent) of the Earth's biosphere is cold (<5 degrees Celsius), and yet contains a rich diversity of microorganisms of which we know little. The uniqueness and sensitivity of Antarctica particularly demands that we rapidly improve our understanding of its biology. The discoveries made could provide fundamental insight about speciation - processes controlling which life forms that colonise the planet.Read moreRead less
Adaptive ecotyping of the toxic cyanobacterium Cylindrospermopsis raciborskii to predict its invasive capacity. We change the world while other organisms adapt to these new conditions. Cyanobacteria (blue green algae) increasingly dominate water bodies that were previously free of these harmful blooms. To minimise the spread of these algae, this project will study the genetic basis that determines how rapidly they can evolve and adapt to a changing planet.