Adaptation to life in the dark: genomic analyses of blind beetles. This project aims to utilise a unique Australian model system based on multiple, independently-evolved subterranean water beetles to explore the adaptive and regressive changes in the genome that occur when surface species colonise subterranean habitats. This project focuses on the evolution of Heat Shock protein (Hsp) genes that play critical roles in adaptation to environmental stress and the process of de-canalisation, the rel ....Adaptation to life in the dark: genomic analyses of blind beetles. This project aims to utilise a unique Australian model system based on multiple, independently-evolved subterranean water beetles to explore the adaptive and regressive changes in the genome that occur when surface species colonise subterranean habitats. This project focuses on the evolution of Heat Shock protein (Hsp) genes that play critical roles in adaptation to environmental stress and the process of de-canalisation, the release of cryptic genetic variation that can allow novel morphologies to evolve in new environments. The project expects to provide further understanding of how species may potentially adapt to environmental stresses in the future, including climate change.Read moreRead less
Is regressive evolution associated with loss of gene function in subterranean animals? This project aims to investigate a fundamental biological process: the evolutionary basis for how non-functional characters, such as eyes in subterranean animals, are lost. It will use a unique model system based on eyeless water beetles, and utilise novel new genomic tools to test whether loss of characters results from gene inactivation.
LATERAL GENE TRANSFER, GENOME EVOLUTION AND THE EMERGENCE OF NEW DISEASES CAUSED BY FUNGAL PATHOGENS IN THE PLEOSPORALES. Normal evolution involves the transfer of genes within species. The modest variation between progeny powers natural selection. Lateral gene transfer is the movement of genetic material between species. It allows for large evolutionary steps. Although common in bacteria, it has rarely been described convincingly in higher organisms such as fungi, plants or animals. We have evi ....LATERAL GENE TRANSFER, GENOME EVOLUTION AND THE EMERGENCE OF NEW DISEASES CAUSED BY FUNGAL PATHOGENS IN THE PLEOSPORALES. Normal evolution involves the transfer of genes within species. The modest variation between progeny powers natural selection. Lateral gene transfer is the movement of genetic material between species. It allows for large evolutionary steps. Although common in bacteria, it has rarely been described convincingly in higher organisms such as fungi, plants or animals. We have evidence that one group of fungal pathogens is particularly adept at acquiring new genes that enable them to cause new diseases. We will determine the mechanism and frequency of gene transfer in this group. The work had fundamental significance in evolutionary biology, in the emergence of new diseases and in the use of genetically-modified organisms.Read moreRead less
Rapid mapping of genes for complex traits. This project will develop a new resource that will allow rapid identification of genes controlling complex traits. This world-leading resource will improve knowledge of diseases like diabetes and neurological diseases.
Evolution and the immune system: genetic differences in immune response between human populations due to adaptation to living in different geo-climatic locations. The project, which investigates the genetics of inter-population differences in immune response, will lead to advances in immunology and population genetics research, explain present population specific differences in disease incidence and possibly forecast future population trends of diseases such as asthma and allergy. The study will ....Evolution and the immune system: genetic differences in immune response between human populations due to adaptation to living in different geo-climatic locations. The project, which investigates the genetics of inter-population differences in immune response, will lead to advances in immunology and population genetics research, explain present population specific differences in disease incidence and possibly forecast future population trends of diseases such as asthma and allergy. The study will strengthen ties with collaborators around the world, thus promoting excellence in Australian research and gain Australia prestige in the international community as a country that produces research of global significance. Understanding the immune system's 'recent evolutionary roots' has implications for the health of Australians, especially in light of Australia's increasingly multi-ethnic background.Read moreRead less
Testing the costs and benefits of gene flow. The mixing of individuals from different populations has traditionally been viewed as beneficial because it maintains genetic variation and offsets the deleterious effects of inbreeding. However, this practice can also have detrimental effects on the fitness of populations. In this project field and laboratory experiments will test whether the benefits gained by mixing of individuals from different populations outweigh the costs or vice versa. In add ....Testing the costs and benefits of gene flow. The mixing of individuals from different populations has traditionally been viewed as beneficial because it maintains genetic variation and offsets the deleterious effects of inbreeding. However, this practice can also have detrimental effects on the fitness of populations. In this project field and laboratory experiments will test whether the benefits gained by mixing of individuals from different populations outweigh the costs or vice versa. In addition to providing information essential for the management of endangered species, the results will provide valuable insights on the processes that determine species' ranges and how new species evolve.Read moreRead less
Transcriptome sequencing and functional characterisation of craniate non-visual sensory systems and their adaptation to diverse light environments. Light detection (photoreception) is critical to species survival. It is not limited to vision, but also serves to set biological rhythms. In mammals, all photoreception is thought to occur solely through the eye, but in non-mammals many other tissues directly monitor light levels. However, the signalling cascades and functional roles of these non-vis ....Transcriptome sequencing and functional characterisation of craniate non-visual sensory systems and their adaptation to diverse light environments. Light detection (photoreception) is critical to species survival. It is not limited to vision, but also serves to set biological rhythms. In mammals, all photoreception is thought to occur solely through the eye, but in non-mammals many other tissues directly monitor light levels. However, the signalling cascades and functional roles of these non-visual pathways are largely unknown. This project will use high-throughput sequencing technologies and functional analyses to trace the origin and function of different irradiance detection systems in each main craniate class. By comparing species from diverse photic habitats, the influence of light as a substrate for adaptation will be investigated.Read moreRead less
CCC method: new applications to electron scattering from atoms and molecules. Achievement of the stated aims will be of enormous benefit to industry
and laboratory research because at the present time no reliably accurate
models exist for the range of the required scattering parameters. The
modelling work will result in development of new software packages for
supercomputers and will provide training for research associates, PhD
and Honours students in an area where Australian theorists are ....CCC method: new applications to electron scattering from atoms and molecules. Achievement of the stated aims will be of enormous benefit to industry
and laboratory research because at the present time no reliably accurate
models exist for the range of the required scattering parameters. The
modelling work will result in development of new software packages for
supercomputers and will provide training for research associates, PhD
and Honours students in an area where Australian theorists are
preeminent.Read moreRead less
A complete computational approach to electron-atom collisions. Our research contributes to multidisciplinary efforts to improve the efficiency and reduce the toxicity of lighting systems, which has far-reaching implications for environmental sustainability. It will also facilitate significant improvements in the accuracy of astrophysical and artificial plasma modelling, as well as providing insight into many processes fundamental to nanotechnology research. The research project will further enha ....A complete computational approach to electron-atom collisions. Our research contributes to multidisciplinary efforts to improve the efficiency and reduce the toxicity of lighting systems, which has far-reaching implications for environmental sustainability. It will also facilitate significant improvements in the accuracy of astrophysical and artificial plasma modelling, as well as providing insight into many processes fundamental to nanotechnology research. The research project will further enhance our reputation in an area where Australian theorists are preeminent, and the research training will produce PhD graduates with a high-level ability in numerical modelling using supercomputers. Such skills are essential in many defense, mining and technological applications of national priority.Read moreRead less
Atomic Collision Theory. Collisions between atomic particles are ever-present in astrophysical and man-made plasmas. Their understanding is vital for both fundamental science and industrial applications. The project will develop underlying scattering theory to solve new and outstanding problems in the field. These range from the fundamental problems of electron- or proton-impact ionisation of hydrogen through to collisions involving targets of interest to astrophysics, fusion, X-ray lasers and t ....Atomic Collision Theory. Collisions between atomic particles are ever-present in astrophysical and man-made plasmas. Their understanding is vital for both fundamental science and industrial applications. The project will develop underlying scattering theory to solve new and outstanding problems in the field. These range from the fundamental problems of electron- or proton-impact ionisation of hydrogen through to collisions involving targets of interest to astrophysics, fusion, X-ray lasers and the lighting industry. The theory will also be extended to atom-surface interactions. The understanding of collisions between atomic particles and surfaces will support emerging fields of nanoscience and quantum computing.
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