Deciphering the regulatory principles of metazoan development. This proposal aims to elucidate how regulatory elements in the genome, known as enhancers, determine the identity and function of animal tissues. Currently, it is believed that enhancers cannot be traced across evolutionarily distant animals. The project uses novel concepts, computational and molecular approaches to identify deeply conserved enhancers. It further dissects the mechanism of function by proteomics and high-throughput ge ....Deciphering the regulatory principles of metazoan development. This proposal aims to elucidate how regulatory elements in the genome, known as enhancers, determine the identity and function of animal tissues. Currently, it is believed that enhancers cannot be traced across evolutionarily distant animals. The project uses novel concepts, computational and molecular approaches to identify deeply conserved enhancers. It further dissects the mechanism of function by proteomics and high-throughput genomics. The expected outcomes will overturn our current view on enhancer evolution and reposition our understanding of how enhancers are functionally encoded in the genome. The work is an important contribution to understanding cellular complexity and species evolution with wide-ranging impact in genetics.Read moreRead less
Improving the efficiency of CRISPR gene editing in cells. Human red blood cells are well-characterised and the globin gene locus is a model system for the study of gene regulation. Gene editing technologies and delivery tools are evolving rapidly and the globin gene locus is the perfect model for gene editing optimisation. This collaboration between UNSW Sydney and CSL aims to bring together our combined expertise and new technologies to develop an optimal platform for genetic modification in a ....Improving the efficiency of CRISPR gene editing in cells. Human red blood cells are well-characterised and the globin gene locus is a model system for the study of gene regulation. Gene editing technologies and delivery tools are evolving rapidly and the globin gene locus is the perfect model for gene editing optimisation. This collaboration between UNSW Sydney and CSL aims to bring together our combined expertise and new technologies to develop an optimal platform for genetic modification in a red blood cell line. Simultaneously, this project aims to generate fundamental insights into mechanisms of human gene regulation. The technological and biological outcomes of this project will be of benefit for future gene editing applications.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE210101593
Funder
Australian Research Council
Funding Amount
$462,948.00
Summary
Developing new tools to search for dark matter. This project aims to propose and assist in the development of novel approaches, based on atomic, molecular and optical technologies, to detect dark matter in the laboratory, and thereby establish the identity and microscopic properties of dark matter. The origin and nature of dark matter remains one of the most important outstanding problems in contemporary science. The intended outcome of this project is that the use of our novel methods will enab ....Developing new tools to search for dark matter. This project aims to propose and assist in the development of novel approaches, based on atomic, molecular and optical technologies, to detect dark matter in the laboratory, and thereby establish the identity and microscopic properties of dark matter. The origin and nature of dark matter remains one of the most important outstanding problems in contemporary science. The intended outcome of this project is that the use of our novel methods will enable us to search for forms of dark matter that have remained largely unprobed to date. This in turn is expected to open up new opportunities in the global hunt for dark matter that should improve our chances of finally discovering the nature and properties of dark matter.Read moreRead less
Violation of fundamental symmetries in atoms, molecules and nuclei. This theoretical project aims to predict enhanced effects of parity (P), time reversal (T), CP and Lorentz invariance violation, which may be measured using atomic spectroscopy and nuclear physics methods. This project expects to contribute to search for physics beyond standard model, including standard model extensions predicting axion, dark matter and T,P-violating electric dipole moments. Expected outcomes include predictions ....Violation of fundamental symmetries in atoms, molecules and nuclei. This theoretical project aims to predict enhanced effects of parity (P), time reversal (T), CP and Lorentz invariance violation, which may be measured using atomic spectroscopy and nuclear physics methods. This project expects to contribute to search for physics beyond standard model, including standard model extensions predicting axion, dark matter and T,P-violating electric dipole moments. Expected outcomes include predictions of new enhanced effects in nuclei, atoms and molecules. By-products and benefits include development of high precision computer codes for atomic calculations, which are expected to have numerous applications including photon and electron processes, properties of superheavy elements and atomic clocks.Read moreRead less
Violation of fundamental symmetries in atomic phenomena. Violation of the fundamental symmetries is predicted by unification theories of elementary particles. The aim of this project is to propose new enhanced effects of parity, time reversal and Lorentz invariance violations and perform their calculations needed to test unification theories in atomic and nuclear phenomena. By-products of this project include development of high precision computer codes for atomic calculations and theory of pro ....Violation of fundamental symmetries in atomic phenomena. Violation of the fundamental symmetries is predicted by unification theories of elementary particles. The aim of this project is to propose new enhanced effects of parity, time reversal and Lorentz invariance violations and perform their calculations needed to test unification theories in atomic and nuclear phenomena. By-products of this project include development of high precision computer codes for atomic calculations and theory of processes involving atoms and nuclei in chaotic excited states. These codes and theory are expected to have numerous applications (e.g. search for Dark Matter and atomic spectra of superheavy elements, atomic clocks and electron and photon processes).
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How does an essential histone variant effect changes in gene expression? The mechanisms that determine how genes are switched on and off in different tissues and at different times are not clearly known. It is well established that gene expression patterns are determined in part by the molecular signals transmitted by variation in the proteins that package eukaryotic DNA. Our aim is to understand new aspects of these mechanisms that revolve around how our DNA is packaged. This foundational knowl ....How does an essential histone variant effect changes in gene expression? The mechanisms that determine how genes are switched on and off in different tissues and at different times are not clearly known. It is well established that gene expression patterns are determined in part by the molecular signals transmitted by variation in the proteins that package eukaryotic DNA. Our aim is to understand new aspects of these mechanisms that revolve around how our DNA is packaged. This foundational knowledge will deepen our understanding of gene regulation in all complex organisms and will inform future efforts to rationally modulate gene expression patterns in agriculture, research and other important areas.Read moreRead less
Using venoms to map critical and evolutionary conserved vulnerabilities. We have developed and applied new functional genomic approaches to study venom evolution. Using CRISPR screening, we find that unrelated venoms act on cells by exploiting the same vulnerabilities. By functionally mapping these vulnerabilities for all venom classes, we can begin to develop universal venom antidotes. Conversely, much of what we know about venom mechanisms comes from a small percentage of the biodiversity with ....Using venoms to map critical and evolutionary conserved vulnerabilities. We have developed and applied new functional genomic approaches to study venom evolution. Using CRISPR screening, we find that unrelated venoms act on cells by exploiting the same vulnerabilities. By functionally mapping these vulnerabilities for all venom classes, we can begin to develop universal venom antidotes. Conversely, much of what we know about venom mechanisms comes from a small percentage of the biodiversity within a venom, and we have developed genomic tools to study the venom “dark matter”. This work will lead to the full molecular characterisation of venom biodiversity, and new venom components will be useful for research or as novel medicines.Read moreRead less
How does the chromatin remodeller CHD4 regulate gene expression? The mechanisms that determine how genes are switched on and off in different tissues and at different times are in many ways still mysterious. It is well established that gene expression patterns in complex organisms are determined in part by the manner in which DNA is physically packaged. Our aim is to define new aspects of these mechanisms that revolve around molecular motors that regulate DNA packaging. This foundational knowled ....How does the chromatin remodeller CHD4 regulate gene expression? The mechanisms that determine how genes are switched on and off in different tissues and at different times are in many ways still mysterious. It is well established that gene expression patterns in complex organisms are determined in part by the manner in which DNA is physically packaged. Our aim is to define new aspects of these mechanisms that revolve around molecular motors that regulate DNA packaging. This foundational knowledge will deepen our understanding of gene regulation in all complex organisms and will inform future efforts to rationally modulate gene expression patterns in agriculture, research and other important areas.Read moreRead less
Understanding Mitotic Telomere Deprotection. This project aims to study telomeres, the DNA and protein structures that protect chromosome ends. During cell division, cells under stress intentionally uncap their telomeres. This project expects to generate new knowledge that challenges the conventional notion of telomeres as static elements, showing instead that telomeres can be dynamic signalling hubs. Expected outcomes of this project include an understanding of the genetic, proteomic, and signa ....Understanding Mitotic Telomere Deprotection. This project aims to study telomeres, the DNA and protein structures that protect chromosome ends. During cell division, cells under stress intentionally uncap their telomeres. This project expects to generate new knowledge that challenges the conventional notion of telomeres as static elements, showing instead that telomeres can be dynamic signalling hubs. Expected outcomes of this project include an understanding of the genetic, proteomic, and signalling pathways involved in this novel phenomenon. This should provide significant benefits to our fundamental understanding of biological processes that protect human genomes and provide a valuable dataset for research on telomere biology, DNA repair, and genome stability.Read moreRead less
Testing links between genomic and morphological evolutionary rates. This project aims to identify, understand, and characterise patterns of evolutionary rates across different levels of biological variation. The project expects to generate knowledge about the tempo and mode of evolution by using a phylogenetic approach to test fundamental models of evolutionary rates, including the link between rates of genomic and morphological evolution. Expected outcomes of this project include detailed insig ....Testing links between genomic and morphological evolutionary rates. This project aims to identify, understand, and characterise patterns of evolutionary rates across different levels of biological variation. The project expects to generate knowledge about the tempo and mode of evolution by using a phylogenetic approach to test fundamental models of evolutionary rates, including the link between rates of genomic and morphological evolution. Expected outcomes of this project include detailed insights into the tempo and mode of macroevolution, better modelling of genomic and phenotypic evolution, and improved design of studies in evolutionary genomics. Benefits of the project include greater understanding of the evolutionary processes that have generated the diversity of the Australian biota.Read moreRead less