Fighting disease on farms: how do vaccinations drive evolution of new pathogen strains? Vaccinating against some types of infectious diseases can drive evolution of new variants of the pathogen. This project will show how bacterial populations evolve in response to vaccination in farms, leading to new vaccination strategies and improved vaccine formulations to better control diseases that are caused by highly variable bacteria.
Lost at sea? Understanding adaptation and dispersal in spiny lobsters. Continual recruitment of young is fundamental to the replenishment of populations, especially when a stock is fished. Existing theory suggests that species with very long planktonic larval stages disperse widely, ensuring their genes are well mixed. However, recently identified genetic differences between populations of rock lobster challenge this paradigm and demonstrate that despite larvae mixing in the ocean for years, loc ....Lost at sea? Understanding adaptation and dispersal in spiny lobsters. Continual recruitment of young is fundamental to the replenishment of populations, especially when a stock is fished. Existing theory suggests that species with very long planktonic larval stages disperse widely, ensuring their genes are well mixed. However, recently identified genetic differences between populations of rock lobster challenge this paradigm and demonstrate that despite larvae mixing in the ocean for years, local recruitment and/or adaptation are at play. Recent developments in genomics and bioinformatics should allow this project to understand the ecological processes underpinning these genetic signatures and determine their evolutionary implications. Such findings could direct targeted rebuilding of depleted fisheries stocks.Read moreRead less
A novel approach to tracking estuarine food chains: combined use of fatty acid and stable isotope biomarkers. Fatty acid biomarkers provide promising novel tracers for studying estuarine food chains. Stable isotopes, commonly employed in food chain studies, lack specificity to allow easy determination of feeding relationships. Different primary producers are characterised by unique fatty acid sequences. This study will thoroughly evaluate the applicability of fatty acid biomarkers in tracking ....A novel approach to tracking estuarine food chains: combined use of fatty acid and stable isotope biomarkers. Fatty acid biomarkers provide promising novel tracers for studying estuarine food chains. Stable isotopes, commonly employed in food chain studies, lack specificity to allow easy determination of feeding relationships. Different primary producers are characterised by unique fatty acid sequences. This study will thoroughly evaluate the applicability of fatty acid biomarkers in tracking both natural and human-impacted estuarine food chains. By developing a new approach of combining the advantages of fatty acid bioamrkers and stable isotopes in studying estuarine trophodynamics, this study will provide essential information for the management of estuarine biotic resources.Read moreRead less
Coral Reef Fishes And The Global Decline In Reef Health: Is Biodiversity At Risk Or Resilient? Successful management and protection of marine species depends on understanding the processes that control the biodiversity of marine communities at both local and regional scales. This study will develop a general model to predict the response of reef fish communities to declining habitat structure and diversity across the tropical Pacific Ocean. Using expertise and ecological tools developed in Austr ....Coral Reef Fishes And The Global Decline In Reef Health: Is Biodiversity At Risk Or Resilient? Successful management and protection of marine species depends on understanding the processes that control the biodiversity of marine communities at both local and regional scales. This study will develop a general model to predict the response of reef fish communities to declining habitat structure and diversity across the tropical Pacific Ocean. Using expertise and ecological tools developed in Australia, and in collaboration with scientists working on the other side of the Pacific, this project will develop a broad-scale understanding of the threats to coral reefs and play a leading role in the development of marine-biodiversity management plans for Australia and neighbouring regions.Read moreRead less
Heterogeneity and ecosystem function: The role of microphytobenthos and macrofauna in inducing spatial variability in biogeochemical processes and fluxes. Human disturbances such as eutrophication (nutrient enrichment) increasingly threaten the sustainable use of Australia's coastal seas. Management of threats such as eutrophication are usually based on observations at large spatial scales, but ecological processes underpinning nutrient dynamics occur at much smaller scales. This multi-disciplin ....Heterogeneity and ecosystem function: The role of microphytobenthos and macrofauna in inducing spatial variability in biogeochemical processes and fluxes. Human disturbances such as eutrophication (nutrient enrichment) increasingly threaten the sustainable use of Australia's coastal seas. Management of threats such as eutrophication are usually based on observations at large spatial scales, but ecological processes underpinning nutrient dynamics occur at much smaller scales. This multi-disciplinary study will examine the relationship between processes mediated by small organisms (microscopic algae and burrowing animals), and large-scale nutrient dynamics pattern on sheltered coasts. Modern technologies will be used for monitoring the micro-scale processes, allowing models to be constructed to benefit both scientists and policy-makers alike.Read moreRead less
Redefining the molecular mechanism underlying crustacean metamorphosis. This project uses the astonishing lifecycle of lobster larvae to better define the pathways and discover the key genes that regulate crustacean metamorphosis. Where, when, why and how metamorphosis occurs in crustaceans are important factors affecting fisheries recruitment and aquaculture production. The project suggests that the current accepted paradigm for the molecular control of metamorphosis does not apply to lobsters ....Redefining the molecular mechanism underlying crustacean metamorphosis. This project uses the astonishing lifecycle of lobster larvae to better define the pathways and discover the key genes that regulate crustacean metamorphosis. Where, when, why and how metamorphosis occurs in crustaceans are important factors affecting fisheries recruitment and aquaculture production. The project suggests that the current accepted paradigm for the molecular control of metamorphosis does not apply to lobsters and possibly other crustaceans where larval metamorphosis and the juvenile transformation are uncoupled. Using a unique supply of cultured lobsters and advanced molecular techniques, the project aims to develop tools to trigger and synchronise metamorphosis for use in aquaculture and invasive species management.Read moreRead less
Seeing without eyes: the evolution of non-visual photoreceptors in vertebrates. Australia's underwater biodiversity is second to none with endemic species representing the earliest stages in vertebrate evolution, many of them relying heavily on vision for survival. Tracing the evolution of light detection and image formation will provide crucial information about the lifestyles of our vertebrate ancestors, the environmental selection pressures driving speciation and colour communication. Charact ....Seeing without eyes: the evolution of non-visual photoreceptors in vertebrates. Australia's underwater biodiversity is second to none with endemic species representing the earliest stages in vertebrate evolution, many of them relying heavily on vision for survival. Tracing the evolution of light detection and image formation will provide crucial information about the lifestyles of our vertebrate ancestors, the environmental selection pressures driving speciation and colour communication. Characterisation of optimal light environments and extra-ocular light detection will also help protect and manage endemic species in wild and captive environments. Read moreRead less
Coupling tropical cyclone and climate physics with ocean waves. It is argued that without accounting for the wave effects directly, the physics of large-scale air-sea interactions is inaccurate and incomplete. The project will introduce explicit coupling of large-scale atmospheric and oceanic phenomena with the physics of surface waves which should lead to improved predictions of tropical cyclones and climate.
Do larval fish leave the reef to avoid parasites? Although fundamental to understanding the community structure of reef fishes, why fish larvae migrate to the open ocean remains controversial. Traditional explanations are that it results in dispersal, avoidance of predators, and increased food. Recent work on the Great Barrier Reef, however, suggests avoiding reef-based micropredatory parasites may be more important. To determine if this so, we will investigate the effect of parasites on larval ....Do larval fish leave the reef to avoid parasites? Although fundamental to understanding the community structure of reef fishes, why fish larvae migrate to the open ocean remains controversial. Traditional explanations are that it results in dispersal, avoidance of predators, and increased food. Recent work on the Great Barrier Reef, however, suggests avoiding reef-based micropredatory parasites may be more important. To determine if this so, we will investigate the effect of parasites on larval fish condition, performance, and susceptibility to micropredators; whether larval fish are vulnerable to reef-based micropredators; the effects of micropredators on fish settlement patterns; and whether larval fish that don't migrate have adaptations to avoid micropredators.Read moreRead less
The role of early life history on the survival of coral reef fishes - opening the Black Box. A fundamental unanswered question in marine ecology and fisheries management is - what influences the number of individuals that survive the larval phase to join a reef population? Theoretical studies show that small changes in the quality of offspring can lead to large changes in the numbers surviving the larval phase. What aspects of offspring quality determine who survives is largely unknown. We use ....The role of early life history on the survival of coral reef fishes - opening the Black Box. A fundamental unanswered question in marine ecology and fisheries management is - what influences the number of individuals that survive the larval phase to join a reef population? Theoretical studies show that small changes in the quality of offspring can lead to large changes in the numbers surviving the larval phase. What aspects of offspring quality determine who survives is largely unknown. We use a multidisciplinary approach to explore what influences the quality of offspring spawned by adults, and whether offspring traits prior to or at hatching determine the identity of individuals that survive to join the reproductive population.Read moreRead less