The genomics of adaptation to environmental change in an ecologically important non-model aquatic organism. Understanding whether natural populations will be able to adapt to rapid environmental change is a major research priority in the twenty-first-century. This project will answer fundamental questions about adaptation and will contribute towards the sustainable management of both aquatic biodiversity and water resources in Australia.
History, transport, or temperature: solving the riddle of Australia's temperate marine biodiversity. Maintaining a healthy and biologically diverse marine environment is essential for sustaining economic development. This project will integrate different research fields to answer fundamental questions about marine biodiversity. This will improve the capacity to identify priorities for conservation planning and sustainable use of Australia's marine assets.
Understanding the evolution of the alternation of generations in the land plant life cycle. This project will investigate the genetic basis and evolution of the land plant life cycle, in which both haploid and diploid phases consist of complex multicellular bodies. The project's findings, which will be made using two model laboratory plants, will be applicable to all plants and will help understand important processes such as pollen and seed production.
Why do only some exotics become invasive? Combining ecological and genomic approaches to address alternative hypotheses in a recent Australian weed. This project will specifically test alternative hypotheses about how weeds become invasive. As invasive weeds affect both agricultural and native ecosystems equally, research on understanding the mechanisms of weed invasion is critical. Outcomes will benefit Australia by allowing better prioritisation of management against exotic plants already i ....Why do only some exotics become invasive? Combining ecological and genomic approaches to address alternative hypotheses in a recent Australian weed. This project will specifically test alternative hypotheses about how weeds become invasive. As invasive weeds affect both agricultural and native ecosystems equally, research on understanding the mechanisms of weed invasion is critical. Outcomes will benefit Australia by allowing better prioritisation of management against exotic plants already in the country by providing predictive tools to estimate likelihood of spread. For formal Pest Risk Analysis by regulators (eg Biosecurity Australia), our project will provide genomic tools by which the potential weediness of a regulated plant can be assessed through genetic screening, and forms part of an international effort to identify 'weedy genes'. Read moreRead less
Using phylogenomics to record the impacts of climate change, extinction and population fragmentation. This project will use ancient DNA from permafrost-preserved Steppe bison bones and bovid exome capture systems to build a detailed record of the genomic impacts of rapid climate and environmental change at the end of the Pleistocene (30 to 11 kyr). The project will analyse how ancestral genetic diversity is distributed amongst surviving bison populations, and the role of nuclear loci under selec ....Using phylogenomics to record the impacts of climate change, extinction and population fragmentation. This project will use ancient DNA from permafrost-preserved Steppe bison bones and bovid exome capture systems to build a detailed record of the genomic impacts of rapid climate and environmental change at the end of the Pleistocene (30 to 11 kyr). The project will analyse how ancestral genetic diversity is distributed amongst surviving bison populations, and the role of nuclear loci under selection and drift. It will create a novel temporal dataset of genomic adaptation and evolution, and will generate critical data for studies of evolutionary processes such as extinctions, speciation and conservation biology and management.Read moreRead less
The genomic landscape of speciation in hominins and other taxa. This project will develop a new analytical framework to build detailed genomic maps of speciation genes across different taxa, to determine whether observed speciation is the result of background selection and demography alone, or whether there are actual barriers to gene flow and introgressed DNA. The model will provide novel insights into the mechanistic basis of speciation, specifically whether a common set of genes or pathways a ....The genomic landscape of speciation in hominins and other taxa. This project will develop a new analytical framework to build detailed genomic maps of speciation genes across different taxa, to determine whether observed speciation is the result of background selection and demography alone, or whether there are actual barriers to gene flow and introgressed DNA. The model will provide novel insights into the mechanistic basis of speciation, specifically whether a common set of genes or pathways are central to the speciation process. The framework will be developed using the large genomic datasets available across a range of plant and animal species. Applying the model to a modern human population dataset will elucidate the role introgressed DNA from Denisovan and Neanderthals has played in shaping human evolutionary history and may provide novel insights into the genetic basis of disease.Read moreRead less
Ecology, Physiology and Phylogeography: an integrated approach to the study of the invasive marine green macroalga Caulerpa taxifolia in Australia. The green marine macroalga Caulerpa taxifolia is one of the world's worst invasive species. In Australia 'exotic strains' of this alga are a listed pest species. Invasions in NSW and SA have caused environmental harm and managing them has cost $10 million since 2000. We propose to integrate ecology, physiology and genetic analyses to provide data to ....Ecology, Physiology and Phylogeography: an integrated approach to the study of the invasive marine green macroalga Caulerpa taxifolia in Australia. The green marine macroalga Caulerpa taxifolia is one of the world's worst invasive species. In Australia 'exotic strains' of this alga are a listed pest species. Invasions in NSW and SA have caused environmental harm and managing them has cost $10 million since 2000. We propose to integrate ecology, physiology and genetic analyses to provide data to better respond to this pest, potentially savings millions of dollars per year. We will produce the first empirical evidence of the effects of climate change and ocean acidification on this marine pest, in the context of increasing coastal human populations.Read moreRead less
Genetic analysis of two distinct reproductive strategies in sexual and thelytokous field populations of an endoparastic wasp. Asexual (thelytokous) females of an insect parasitoid, Venturia canescens, which develop inside another insect, exhibit evolutionarily stable mixtures of life-history strategies, allowing two genetically distinct wasp lines to coexist sympatrically on the same host resources. The two thelytokous lines differ in a virus-like particle protein-coding gene (VLP1), which raise ....Genetic analysis of two distinct reproductive strategies in sexual and thelytokous field populations of an endoparastic wasp. Asexual (thelytokous) females of an insect parasitoid, Venturia canescens, which develop inside another insect, exhibit evolutionarily stable mixtures of life-history strategies, allowing two genetically distinct wasp lines to coexist sympatrically on the same host resources. The two thelytokous lines differ in a virus-like particle protein-coding gene (VLP1), which raises the question whether the VLP1 gene locus is genetically associated with the phenotype. We will investigate the genetic basis for the observed phenotypic differences, by comparing the two thelytokous lines with the corresponding homozygous VLP1-genotypes in sexual strains. The outcome will provide a molecular and genetic framework to test parthenogenetic reproduction strategies in some insect species.Read moreRead less
Control points in nitrogen uptake: enhancing the response of cereals to nitrogen supply and demand. Vast amounts of nitrogen fertiliser are applied to cereal crops to maintain yields. By uncovering what limits nitrogen uptake in cereals, this project will provide the scientific basis for improving nitrogen use efficiency and decreasing fertiliser use, with significant economic and environmental benefits.
Establishing genetic guidelines for the effective ecological restoration of seagrass meadows. Industry and coastal development in Australia are of national importance for economic growth and prosperity, but they threaten benthic habitats, like seagrasses. Loss of seagrass meadows without mitigation results in greater coastal impacts from damaging storms and waves and a reduction in the health and productivity of marine environments globally. Thus the ecological restoration of seagrass meadows is ....Establishing genetic guidelines for the effective ecological restoration of seagrass meadows. Industry and coastal development in Australia are of national importance for economic growth and prosperity, but they threaten benthic habitats, like seagrasses. Loss of seagrass meadows without mitigation results in greater coastal impacts from damaging storms and waves and a reduction in the health and productivity of marine environments globally. Thus the ecological restoration of seagrass meadows is an urgent national priority action that involves industry, government and the community. Through the detailed assessment of population genetic variation and key population processes in seagrasses, this project will establish genetic guidelines for a more effective seagrass restoration industry.Read moreRead less