Demographic and evolutionary inferences from large, whole-genome datasets. A new data structure for genome-wide datasets has allowed great improvements in the efficiency of genomic data storage and in population genomics simulations, which are crucial to developing and testing mathematical models of population history and species evolution. We will take these advances in new directions, using efficient data structures to dramatically improve inferences about: the demographic histories of popul .... Demographic and evolutionary inferences from large, whole-genome datasets. A new data structure for genome-wide datasets has allowed great improvements in the efficiency of genomic data storage and in population genomics simulations, which are crucial to developing and testing mathematical models of population history and species evolution. We will take these advances in new directions, using efficient data structures to dramatically improve inferences about: the demographic histories of populations, rates of genome change, and phylogenetic networks, and we will develop the first inference methods for the multispecies coalescent with recombination. Outcomes will include advances in understanding the evolutionary histories of humans and other species, including pathogens of importance for global health.Read moreRead less
Evolution and role of neo-sex chromosomes in mitonuclear co-evolution. This project aims to characterize the evolution of novel, extended sex chromosomes in an Australian bird, then elucidate their role in climate-associated adaptive evolution. The species falls into two lineages bearing distinct mitochondrial genomes and nuclear-encoded mitochondrial genes carried on sex chromosomes. The project aims to test whether this extraordinary genome arrangement is splitting the species into two forms: ....Evolution and role of neo-sex chromosomes in mitonuclear co-evolution. This project aims to characterize the evolution of novel, extended sex chromosomes in an Australian bird, then elucidate their role in climate-associated adaptive evolution. The species falls into two lineages bearing distinct mitochondrial genomes and nuclear-encoded mitochondrial genes carried on sex chromosomes. The project aims to test whether this extraordinary genome arrangement is splitting the species into two forms: one adapted to hotter, drier environments, one to milder ones. This would be tackled using an innovative combination of genomics, cytogenetics, and metabolic data. Understanding the mechanisms at play would represent a major advance in ecology and evolution, with potential implications for conservation management.Read moreRead less
Can mitochondrial and nuclear co-evolution drive climate adaptation? This project aims to reveal whether co-evolution between the mitochondrial genome of a wild bird and partner nuclear genes is causing the species to split into two forms, one adapted to inland environments and one to coastal conditions. Mitochondrial-nuclear co-evolution has great potential to illuminate new modes of climate adaptation and lineage divergence. This understanding will provide significant benefits, with implicatio ....Can mitochondrial and nuclear co-evolution drive climate adaptation? This project aims to reveal whether co-evolution between the mitochondrial genome of a wild bird and partner nuclear genes is causing the species to split into two forms, one adapted to inland environments and one to coastal conditions. Mitochondrial-nuclear co-evolution has great potential to illuminate new modes of climate adaptation and lineage divergence. This understanding will provide significant benefits, with implications for conservation management.Read moreRead less
Unlocking the secrets of the mitochondrion. This project aims to determine the frequency and mechanisms by which male-harming mutations (those with negative effects limited to males) accrue within the mitochondrial DNA. Theory predicts maternal inheritance of mitochondrial DNA will lead to accumulation of these mutations, but the real-world implications of this theory are unknown. Leveraging an innovative approach, this project expects to generate new knowledge into the causes of sex differences ....Unlocking the secrets of the mitochondrion. This project aims to determine the frequency and mechanisms by which male-harming mutations (those with negative effects limited to males) accrue within the mitochondrial DNA. Theory predicts maternal inheritance of mitochondrial DNA will lead to accumulation of these mutations, but the real-world implications of this theory are unknown. Leveraging an innovative approach, this project expects to generate new knowledge into the causes of sex differences in physiology and health. Expected outcomes include insights that advance understanding of fundamental biological processes, and training of students. Expected benefits include strengthening of Australia’s research capacity, by setting the research agenda in this rapidly developing field.Read moreRead less
Microcosm Experiments for Improved Species Distribution Models. This project aims to use a spatially-explicit experimental system based on protists (microscopic organisms) to evaluate the predictive performance of dynamic distribution models, which are a newly-emerging class of species distribution models. Species distribution models are a fundamental part of ecological science, and underpin a range of applications related to managing threatened and invasive species. The project is expected to p ....Microcosm Experiments for Improved Species Distribution Models. This project aims to use a spatially-explicit experimental system based on protists (microscopic organisms) to evaluate the predictive performance of dynamic distribution models, which are a newly-emerging class of species distribution models. Species distribution models are a fundamental part of ecological science, and underpin a range of applications related to managing threatened and invasive species. The project is expected to provide insights into when these models are likely to work better than more traditional correlative models in non-lab environments. The experiments will inform further development of dynamic distribution models, and help determine whether dynamic distribution models can be usefully applied to species management.Read moreRead less
Where migrants go: A study of immigrants' post-arrival moves in Australia . The project aims to establish the geographical and occupational trajectories of different migrant groups after arrival in Australia. Migration within Australia is a key driver of economic, demographic and social change. Recognising the growing diversity of immigrants, including the rapid rise in temporary migration, the project examines post-arrival moves of immigrants by visa type, country of birth and year of arrival. ....Where migrants go: A study of immigrants' post-arrival moves in Australia . The project aims to establish the geographical and occupational trajectories of different migrant groups after arrival in Australia. Migration within Australia is a key driver of economic, demographic and social change. Recognising the growing diversity of immigrants, including the rapid rise in temporary migration, the project examines post-arrival moves of immigrants by visa type, country of birth and year of arrival. It seeks to improve understanding of the incidence, spatial patterns and drivers of migrants’ movement within Australia and the socio-demographic impact on regions and individuals. Such understanding is an essential first step to the formulation of effective immigration and settlement policies and programs.Read moreRead less
Genetic architecture and evolution of complex traits across populations. Most human traits have a genetic component and display substantial diversity within and among populations. How natural selection changes and maintains genetic variation in human traits is a long-standing question in evolution that the proposed project aims to answer. Using innovative statistical methods and largest genomic “big” datasets ever across populations of different ancestral backgrounds, this project expects to gen ....Genetic architecture and evolution of complex traits across populations. Most human traits have a genetic component and display substantial diversity within and among populations. How natural selection changes and maintains genetic variation in human traits is a long-standing question in evolution that the proposed project aims to answer. Using innovative statistical methods and largest genomic “big” datasets ever across populations of different ancestral backgrounds, this project expects to generate new knowledge on the roles of natural selection in shaping the genetic variation in traits and identify key factors that drive the differentiation of human populations. These outcomes will significantly improve our understanding on the evolution of human traits and adaptation of populations to changing environments.Read moreRead less
Genomic vulnerability . Aims: This project aims to validate genomic predictions of species’ vulnerability to climate change.
Significance: Species are already responding to climate change, and many face high predicted rates of extinction. Some species will be able to avoid extinction via evolutionary adaptation. Yet we currently lack the ability to accurately predict which species do and do not have the capacity to adapt and avoid extinction.
Expected outcomes: Expected outcomes of this project ....Genomic vulnerability . Aims: This project aims to validate genomic predictions of species’ vulnerability to climate change.
Significance: Species are already responding to climate change, and many face high predicted rates of extinction. Some species will be able to avoid extinction via evolutionary adaptation. Yet we currently lack the ability to accurately predict which species do and do not have the capacity to adapt and avoid extinction.
Expected outcomes: Expected outcomes of this project include enhanced ability to predict species’ vulnerability to ongoing climate change.
Benefits: This project should significantly improve our capacity to manage threatened and keystone species by identifying those that will require targeted conservation management.
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Mitigating bias in statistical analyses of data collected over time. This project aims to develop innovative nonparametric distribution and regression curve estimation techniques from data collected over time. These curves are key statistical tools for describing populations, but often, their estimators are inefficient when the data are massive, growing and change over time, or too restrictive when the data exhibit measurement errors and a fraction of them are equal to zero. The project expects ....Mitigating bias in statistical analyses of data collected over time. This project aims to develop innovative nonparametric distribution and regression curve estimation techniques from data collected over time. These curves are key statistical tools for describing populations, but often, their estimators are inefficient when the data are massive, growing and change over time, or too restrictive when the data exhibit measurement errors and a fraction of them are equal to zero. The project expects to develop novel, less restrictive and more realistic nonparametric curve estimation methods in these complex settings. Outcomes include new practical statistical methods and software to benefit experts in diverse fields from nutrition and epidemiology, to environmental science and digital platforms, amongst others.Read moreRead less
Transnationalism and diaspora. This study aims to incorporate diaspora, circular migration and transnational linkages into demographic concepts of population and migration. Transnationalism’s replacement of permanent movements as the dominant paradigm in migration studies raises questions for demographic measurement and the study of migration. This project will use traditional demographic data with integrated quantitative and qualitative research to analyse the diaspora–migration–development nex ....Transnationalism and diaspora. This study aims to incorporate diaspora, circular migration and transnational linkages into demographic concepts of population and migration. Transnationalism’s replacement of permanent movements as the dominant paradigm in migration studies raises questions for demographic measurement and the study of migration. This project will use traditional demographic data with integrated quantitative and qualitative research to analyse the diaspora–migration–development nexus. It will study four countries to understand the characteristics of diasporas, their international linkages and their potential for enhancing development in origin countries. This is expected to generate policy advice on how to maximise the economic potential of diaspora.Read moreRead less