Genetic architecture and evolution of complex traits across populations. Most human traits have a genetic component and display substantial diversity within and among populations. How natural selection changes and maintains genetic variation in human traits is a long-standing question in evolution that the proposed project aims to answer. Using innovative statistical methods and largest genomic “big” datasets ever across populations of different ancestral backgrounds, this project expects to gen ....Genetic architecture and evolution of complex traits across populations. Most human traits have a genetic component and display substantial diversity within and among populations. How natural selection changes and maintains genetic variation in human traits is a long-standing question in evolution that the proposed project aims to answer. Using innovative statistical methods and largest genomic “big” datasets ever across populations of different ancestral backgrounds, this project expects to generate new knowledge on the roles of natural selection in shaping the genetic variation in traits and identify key factors that drive the differentiation of human populations. These outcomes will significantly improve our understanding on the evolution of human traits and adaptation of populations to changing environments.Read moreRead less
Discovering sex determining genes in a reptile with genetic and environmental sex determination. Reptile sex determination is particularly fascinating because it is triggered either by genes on sex chromosomes or by the nest temperature. This project will identify and characterise candidate sex determining genes in a model reptile to understand how genes control sexual differentiation and how they interact with temperature.
Exposing the complex and flexible genetic basis to polygenic adaptation: integrating population and quantitative genomic approaches. Using leading-edge genomic approaches, the project will dissect the genetic basis to adaptation across an entire species range. The results will highlight the complex nature of adaptation to environmental change and will deliver new approaches to study it in natural populations.
The role of X-chromosome inactivation in quantitative trait variation. This project aims to develop methods and software that can be applied to genetic and genomic studies in animal breeding, wildlife protection, and humans. X-chromosome inactivation (XCI) is an important biological phenomenon but its effect on quantitative trait variation remains largely unknown. This project aims to develop novel statistical methods to estimate the X-linked genetic variance and the proportion that escapes XCI, ....The role of X-chromosome inactivation in quantitative trait variation. This project aims to develop methods and software that can be applied to genetic and genomic studies in animal breeding, wildlife protection, and humans. X-chromosome inactivation (XCI) is an important biological phenomenon but its effect on quantitative trait variation remains largely unknown. This project aims to develop novel statistical methods to estimate the X-linked genetic variance and the proportion that escapes XCI, and identify trait-associated genetic variants affected and not affected by XCI. The methods would then be applied to large datasets from genome-wide association studies for a large number of traits. Project outcomes may enable us to better understand the role of XCI in quantitative trait variation and gene expression in humans and animals.Read moreRead less
Lost at sea? Understanding adaptation and dispersal in spiny lobsters. Continual recruitment of young is fundamental to the replenishment of populations, especially when a stock is fished. Existing theory suggests that species with very long planktonic larval stages disperse widely, ensuring their genes are well mixed. However, recently identified genetic differences between populations of rock lobster challenge this paradigm and demonstrate that despite larvae mixing in the ocean for years, loc ....Lost at sea? Understanding adaptation and dispersal in spiny lobsters. Continual recruitment of young is fundamental to the replenishment of populations, especially when a stock is fished. Existing theory suggests that species with very long planktonic larval stages disperse widely, ensuring their genes are well mixed. However, recently identified genetic differences between populations of rock lobster challenge this paradigm and demonstrate that despite larvae mixing in the ocean for years, local recruitment and/or adaptation are at play. Recent developments in genomics and bioinformatics should allow this project to understand the ecological processes underpinning these genetic signatures and determine their evolutionary implications. Such findings could direct targeted rebuilding of depleted fisheries stocks.Read moreRead less
Detecting sex differences in natural selection. This project aims to develop new genomic approaches for understanding how genetic mutations can differentially affect reproductive success in males and females. Applying novel tests, this project aims to uncover previously hidden genetic conflicts between the sexes. This will provide significant benefits, such as new tools that will be broadly applicable to the wider research community, and help to answer key questions in genetics and evolutionary ....Detecting sex differences in natural selection. This project aims to develop new genomic approaches for understanding how genetic mutations can differentially affect reproductive success in males and females. Applying novel tests, this project aims to uncover previously hidden genetic conflicts between the sexes. This will provide significant benefits, such as new tools that will be broadly applicable to the wider research community, and help to answer key questions in genetics and evolutionary biology in the current genomic era.Read moreRead less
Simulating viral evolution and genetic complexity. This project has direct relevance to understanding the growth of viral infections, and therefore has possible practical applications in disease research and control. Examples of these are emerging diseases in humans such as those caused by HIV-1, SARS coronavirus and Dengue virus, which cause considerable human suffering throughout the world. A major part of current research into these diseases involves attempts to model the evolutionary geneti ....Simulating viral evolution and genetic complexity. This project has direct relevance to understanding the growth of viral infections, and therefore has possible practical applications in disease research and control. Examples of these are emerging diseases in humans such as those caused by HIV-1, SARS coronavirus and Dengue virus, which cause considerable human suffering throughout the world. A major part of current research into these diseases involves attempts to model the evolutionary genetics and dynamics of virus populations in order to understand how to control epidemics, develop vaccines and design drugs. The research program is designed to provide new computational modelling tools for this purpose, which may have wider applications as well.
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Connectivity and movements of large pelagic species of ecotourism value. The project aims to answer key questions about the biology, ecology and sustainability of the world’s manta ray species to provide the information and tools for management and conservation of these charismatic and valuable species. In particular, the project aims to determine the likely impact of climate variability and fisheries that operate to Australia’s north on manta-based ecotourism in the Indo-Pacific region, as clim ....Connectivity and movements of large pelagic species of ecotourism value. The project aims to answer key questions about the biology, ecology and sustainability of the world’s manta ray species to provide the information and tools for management and conservation of these charismatic and valuable species. In particular, the project aims to determine the likely impact of climate variability and fisheries that operate to Australia’s north on manta-based ecotourism in the Indo-Pacific region, as climate change and active low-value fisheries may both jeopardise a high-value ecotourism industry. The project seeks to explore geographic distributions, local and large-scale movements, population sizes, structure, and inter-connectivity in the region to assess the effect of climate and fisheries on manta ray populations.Read moreRead less
Some like it hot: invasive species, hybridisation, and a warming world. Temperatures are rising and invasive species are becoming more prevalent. This project aims to understand how climate change and hybridisation between exotic and native marine species leads to rapid adaptation. Using integrative approaches from genomics and physiology and focusing on Australian blue mussels, this proposal will test leading hypotheses about how climate change and hybridisation can enable rapid adaptation and ....Some like it hot: invasive species, hybridisation, and a warming world. Temperatures are rising and invasive species are becoming more prevalent. This project aims to understand how climate change and hybridisation between exotic and native marine species leads to rapid adaptation. Using integrative approaches from genomics and physiology and focusing on Australian blue mussels, this proposal will test leading hypotheses about how climate change and hybridisation can enable rapid adaptation and the spread of exotic species. Outcomes will include strategies for minimising impacts of invasive mussels and boosting warm-temperature adaptation in aquaculture mussels and restored shellfish reefs. This project will yield fundamental insights into how marine species can quickly adapt to warming seas.Read moreRead less
Fisheries genomics of snapper in Australia and New Zealand Waters. This industry-driven project aims to assemble a strategic research alliance to generate and apply knowledge to a highly significant fisheries resource. It involves collaboration between the five major state government fisheries agencies in Australia, the New Zealand’s Crown Research Institute for seafood and two Australian labs with leadership in fish genetics and genomics. It expects to generate and integrate genomic, environmen ....Fisheries genomics of snapper in Australia and New Zealand Waters. This industry-driven project aims to assemble a strategic research alliance to generate and apply knowledge to a highly significant fisheries resource. It involves collaboration between the five major state government fisheries agencies in Australia, the New Zealand’s Crown Research Institute for seafood and two Australian labs with leadership in fish genetics and genomics. It expects to generate and integrate genomic, environmental and phenotypic datasets for snapper populations from across vast coastal regions of the two countries. The outcomes should substantially enhance intra- and inter-jurisdictional fisheries management and aquaculture initiatives, providing commercial, social and environmental benefits for many stakeholders.Read moreRead less