Genome dynamics following plastid endosymbiosis. Plastid endosymbiosis events (enslavement of an algal cell inside of a host cell to form a plastid) are difficult to pinpoint because the genomic data required for a broad array of species are rarely available. Furthermore, the classical method used to infer endosymbiotic gene transfers is being criticised. This project will elucidate the origin of chlorarachniophyte and dinoflagellate plastids and characterise the genome dynamics following endosy ....Genome dynamics following plastid endosymbiosis. Plastid endosymbiosis events (enslavement of an algal cell inside of a host cell to form a plastid) are difficult to pinpoint because the genomic data required for a broad array of species are rarely available. Furthermore, the classical method used to infer endosymbiotic gene transfers is being criticised. This project will elucidate the origin of chlorarachniophyte and dinoflagellate plastids and characterise the genome dynamics following endosymbiosis. It uses densely sampled genome data obtained with high-throughput sequencing technologies. Simulation studies will be used to evaluate methods for inferring endosymbiotic gene transfer and alignment-free methods will be used to improve phylogenomic pipelines.Read moreRead less
Engineering safer pastures for livestock. This project aims to develop subterranean clover with elevated condensed tannins in leaves. This important pasture legume is currently a bloat risk for cattle and sheep due to low condensed tannins and high soluble proteins. Bloat is a health issue that costs the Australian and New Zealand livestock industries over $200 million per annum. Condensed tannins can reduce bloat, decrease methane production and improve efficiency of production. A novel approac ....Engineering safer pastures for livestock. This project aims to develop subterranean clover with elevated condensed tannins in leaves. This important pasture legume is currently a bloat risk for cattle and sheep due to low condensed tannins and high soluble proteins. Bloat is a health issue that costs the Australian and New Zealand livestock industries over $200 million per annum. Condensed tannins can reduce bloat, decrease methane production and improve efficiency of production. A novel approach using CRISPR and other innovative molecular techniques will generate breeding lines high in condensed tannins and deliver knowledge applicable to other pasture legumes. Expected outcomes for livestock producers include improved animal welfare, reduced carbon emissions and enhanced profits.Read moreRead less
Seaweed forests of the future: responses to ocean acidification and warming. The aim is to discover if rising levels of oceanic carbon dioxide will offset negative effects of ocean warming on seaweeds, using targeted physiological experiments together with novel molecular diagnostics. Seaweeds create habitats and food for shellfish and fish, and play a crucial role in long term ‘blue carbon’ storage. They are predicted to benefit from future carbon dioxide enrichment, but to test this forecast r ....Seaweed forests of the future: responses to ocean acidification and warming. The aim is to discover if rising levels of oceanic carbon dioxide will offset negative effects of ocean warming on seaweeds, using targeted physiological experiments together with novel molecular diagnostics. Seaweeds create habitats and food for shellfish and fish, and play a crucial role in long term ‘blue carbon’ storage. They are predicted to benefit from future carbon dioxide enrichment, but to test this forecast requires a detailed understanding of the mechanisms used by seaweeds to acquire dissolved inorganic carbon. The expected outcome is robust predictions of how the primary productivity of coastal waters will respond to future high carbon dioxide conditions, enabling human adaptation to environmental change.
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Functional dynamics of skeletal microbiota in healthy and bleached corals. Little is known about the microbiota inhabiting coral skeletons, but several sources of evidence point to their importance in the coral holobiont. Particularly during coral bleaching, drastic changes happen in the skeletal microbiome, with potential beneficial as well as detrimental effects on the holobiont. This project will characterise the functions of skeletal microbiota, how microbial communities are structured along ....Functional dynamics of skeletal microbiota in healthy and bleached corals. Little is known about the microbiota inhabiting coral skeletons, but several sources of evidence point to their importance in the coral holobiont. Particularly during coral bleaching, drastic changes happen in the skeletal microbiome, with potential beneficial as well as detrimental effects on the holobiont. This project will characterise the functions of skeletal microbiota, how microbial communities are structured along physico-chemical gradients, and how microbial gene expression changes through coral bleaching. This will lead to better insights into the roles of skeletal microbiota in the holobiont, the processes occurring in the skeleton during bleaching, and the role that skeletal microbiota may play in the fate of bleached corals.Read moreRead less
Identifying potential trade-offs of adapting to climate change. Climate change and marine heatwaves introduce strong, directional selection for heat tolerance which, in turn, alters the genetic composition and diversity of marine species. While this may facilitate adaptation to warmer conditions, reduced genetic diversity may limit resilience or cause maladaptation to additional stressors. This project will focus on habitat-forming kelps and will aim to both assess the negative consequences of r ....Identifying potential trade-offs of adapting to climate change. Climate change and marine heatwaves introduce strong, directional selection for heat tolerance which, in turn, alters the genetic composition and diversity of marine species. While this may facilitate adaptation to warmer conditions, reduced genetic diversity may limit resilience or cause maladaptation to additional stressors. This project will focus on habitat-forming kelps and will aim to both assess the negative consequences of rapid selection and to disentangle the mechanisms of climate adaptation. Through a powerful combination of controlled experiments on known genotypes and cutting-edge transcriptomic approaches, this project will transform our understanding of the adaptability of foundation species in a rapidly changing ocean.
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Evolutionary dynamics of the algae: understanding adaptive potential under environmental change. Ecological niches and trace metal availability have large influences on the role of marine algae as a sink for anthropogenic carbon dioxide. This interdisciplinary project will characterise the evolution of ecological niches and trace metal utilisation in marine algae to better predict the fate of anthropogenic carbon dioxide and coastal ecosystems.
Turf Wars: fighting the new battle facing blue forests. This project aims to use ecological models and field experiments to uncover drivers and critical thresholds for turf expansion. Habitat loss is a leading threat to goods and services from the oceans. Globally, kelp forests are collapsing and being replaced by persistent unwanted algal ‘turfs’. Understanding of this habitat shift is rudimentary, and solutions to mitigate the impacts virtually non-existent. Through stress experiments and geno ....Turf Wars: fighting the new battle facing blue forests. This project aims to use ecological models and field experiments to uncover drivers and critical thresholds for turf expansion. Habitat loss is a leading threat to goods and services from the oceans. Globally, kelp forests are collapsing and being replaced by persistent unwanted algal ‘turfs’. Understanding of this habitat shift is rudimentary, and solutions to mitigate the impacts virtually non-existent. Through stress experiments and genomic analyses, this project aims to discover resilient kelps that promote forest persistence under stress. By expanding our understanding of critical habitat transitions, and exploring new solutions, this project aims to enhance our capacity to respond to the ongoing degradation of Australia’s Great Southern Reef.Read moreRead less
Restoration of Sydney's key habitat forming seaweed forests. Restoration of Sydney's key habitat forming seaweed forests. This project aims to restore a key habitat forming-seaweed and its ecosystem, by integrating experimental ecology, population genetics, eco-engineering and restoration ecology. Habitat degradation causes worldwide loss of biodiversity and ecosystem function, increasingly needing active restoration of ecosystems. However, restoration efforts often lack the critical ecological ....Restoration of Sydney's key habitat forming seaweed forests. Restoration of Sydney's key habitat forming seaweed forests. This project aims to restore a key habitat forming-seaweed and its ecosystem, by integrating experimental ecology, population genetics, eco-engineering and restoration ecology. Habitat degradation causes worldwide loss of biodiversity and ecosystem function, increasingly needing active restoration of ecosystems. However, restoration efforts often lack the critical ecological understanding for success, largely ignore major habitats, and in marine systems rarely happen at the scale of the degradation. This innovative approach, could be adopted globally to restore these crucial marine habitats. Anticipated outcomes are the re-establishment of commercially harvestable resources and new tools for active conservation of critical marine habitats.Read moreRead less
Genes to ecosystems: drivers of resilience in underwater marine forests. This project seeks to determine if population connectivity and thermal stress limits the ecological performance and capacity for biological adaptation of seaweed forests to environmental change. The rates of warming in Australia’s temperate marine environments are among the fastest in the world, threatening seaweed forests that support rich marine life and generate substantial socioeconomic values. By integrating studies of ....Genes to ecosystems: drivers of resilience in underwater marine forests. This project seeks to determine if population connectivity and thermal stress limits the ecological performance and capacity for biological adaptation of seaweed forests to environmental change. The rates of warming in Australia’s temperate marine environments are among the fastest in the world, threatening seaweed forests that support rich marine life and generate substantial socioeconomic values. By integrating studies of connectivity among seaweed forests along replicate coastlines on both sides of the Australian continent, with field and breeding experiments, this project expects to expose the role of genetic diversity in mediating ecological resilience to rapid environmental change.Read moreRead less