Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0989334
Funder
Australian Research Council
Funding Amount
$400,000.00
Summary
An integrated high-performance computational platform powering systems biology investigation. Systems biology is the study of the organism as a whole and provides a deeper understanding of biological processes than is possible by studying components separately. Recognised as essential for biological research, we propose to establish an advanced computational platform to study these processes at a systems level. Its hardware and specialised software will allow Australian researchers to examine co ....An integrated high-performance computational platform powering systems biology investigation. Systems biology is the study of the organism as a whole and provides a deeper understanding of biological processes than is possible by studying components separately. Recognised as essential for biological research, we propose to establish an advanced computational platform to study these processes at a systems level. Its hardware and specialised software will allow Australian researchers to examine complex pathways involved in animal and human health and disease, as well as in biotechnology and environmental processes. It will provide unique capabilities not currently available in Australia, and help Australian researchers remain internationally competitive in breakthrough science and frontier technologies.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0560940
Funder
Australian Research Council
Funding Amount
$229,326.00
Summary
Stable Isotope Ratio Mass Spectrometry Facility. This application for a Stable Isotope Ratio Mass Spectrometer Facility provides a focus for research collaboration and training in northern Australia. The Facility will enhance strong collaboration between organisations committed to increasing understanding of unique northern environments, and will include the Arafura Timor Research Facility, a Major National Research Facility. The Facility will contribute to studies of conservation biology, nat ....Stable Isotope Ratio Mass Spectrometry Facility. This application for a Stable Isotope Ratio Mass Spectrometer Facility provides a focus for research collaboration and training in northern Australia. The Facility will enhance strong collaboration between organisations committed to increasing understanding of unique northern environments, and will include the Arafura Timor Research Facility, a Major National Research Facility. The Facility will contribute to studies of conservation biology, natural resource management, environmental and marine science and resource development in the tropical north. It will help develop knowledge bases, innovative approaches to environmental management and sustainable development and high levels of research and research training for regional development.Read moreRead less
Development and implementation of biodiversity information for sustainable management of South Australian groundwater. Clean potable water is one of the most important resources for human health and a successful economy. Increasingly, subterranean aquifers are used for storage and recovery of water. These aquifers contain dynamic ecosystems, but little is known about species composition or about the importance of the presence of various species for water quality. We will use the latest laborator ....Development and implementation of biodiversity information for sustainable management of South Australian groundwater. Clean potable water is one of the most important resources for human health and a successful economy. Increasingly, subterranean aquifers are used for storage and recovery of water. These aquifers contain dynamic ecosystems, but little is known about species composition or about the importance of the presence of various species for water quality. We will use the latest laboratory techniques and DNA identification methods to provide a template for determining ground water diversity and food web dynamics throughout Australia. This project will lead to a better understanding of how to manage ground water in a sustainable manner.Read moreRead less
Vision and remote sensing: using nature's technology to examine the health of The Great Barrier Reef and Moreton Bay. We aim to use what is known and what we will discover about animals visual systems to examine environmental health on The Great Barrier Reef and Moreton Bay. Technology and knowledge from 8 university departments, 4 industry partners, and 7 international collaborators will be combined to both learn and provide information. The innovative aspect of our approach is to examine the w ....Vision and remote sensing: using nature's technology to examine the health of The Great Barrier Reef and Moreton Bay. We aim to use what is known and what we will discover about animals visual systems to examine environmental health on The Great Barrier Reef and Moreton Bay. Technology and knowledge from 8 university departments, 4 industry partners, and 7 international collaborators will be combined to both learn and provide information. The innovative aspect of our approach is to examine the world with the eyes of birds, fish and invertebrates. Tricks animals employ to solve visual tasks will be implemented at scales of instrumentation from hand-held to remote sensing and used to address problems such as coral reef bleaching.Read moreRead less
Early warning of cyanobacteria blooms in drinking water reservoirs by means of evolutionary algorithms. Estimated economic cost of cyanobacteria blooms to Australia are at $150 million p.a. Early warning for cyanobacteria blooms will inform water managers to conduct preventive and operational control in reservoirs and water works, and significantly lower risks for public health and costs for monitoring and treatment. Resulting early warning systems will be novel prototypes for cyanobacteria bloo ....Early warning of cyanobacteria blooms in drinking water reservoirs by means of evolutionary algorithms. Estimated economic cost of cyanobacteria blooms to Australia are at $150 million p.a. Early warning for cyanobacteria blooms will inform water managers to conduct preventive and operational control in reservoirs and water works, and significantly lower risks for public health and costs for monitoring and treatment. Resulting early warning systems will be novel prototypes for cyanobacteria blooms in drinking water reservoirs based on forecasting models adaptable to environmental and climate change. Model-based scenario analysis will also assist in informed decisions on effects of drought, injection of recycled water and global warming to cyanobacteria growth.Read moreRead less
Intron encoded RNA regulatory networks in yeast. This project has the capacity to transform our understanding of the evolution, development and genetic variation of complex organisms, as well as the self-organization of complex systems in general. The national and community benefits of the project will be to maintain Australian leadership in advanced genetics and genome-phenome informatics. It will provide a platform for many applications in biology and biotechnology, including new genetic diagn ....Intron encoded RNA regulatory networks in yeast. This project has the capacity to transform our understanding of the evolution, development and genetic variation of complex organisms, as well as the self-organization of complex systems in general. The national and community benefits of the project will be to maintain Australian leadership in advanced genetics and genome-phenome informatics. It will provide a platform for many applications in biology and biotechnology, including new genetic diagnostics and an informed basis for the engineering of complex traits in agriculture. The project will also provide insights into the structure of biological communication and control systems with applications in information science and the programming of integrated complex systems in other domains.Read moreRead less
Sulfur cycling in soil environments - how bacteria contribute to the oxidation of organic and inorganic sulfur compounds. Element cycling in soil environments is of global significance as soils constantly exchange compounds with the atmosphere and cover vast areas of land. Many of the compounds exchanged are known contributors to the greenhouse effect and other phenomena such as acid rain. By elucidating the regulation of bacterial sulfur oxidation pathways and their integration into general met ....Sulfur cycling in soil environments - how bacteria contribute to the oxidation of organic and inorganic sulfur compounds. Element cycling in soil environments is of global significance as soils constantly exchange compounds with the atmosphere and cover vast areas of land. Many of the compounds exchanged are known contributors to the greenhouse effect and other phenomena such as acid rain. By elucidating the regulation of bacterial sulfur oxidation pathways and their integration into general metabolism, we will enable the development of better management strategies for agricultural soils. Our data will also significantly improve understanding of how soil processes will change in response to changing climatic conditions.Read moreRead less
From genotype to phenotype - systems biology bridging the gap. This project is basic research at the forefront of international science and deals with a fundamental question of modern biology: 'How do genes determine the makeup of an organism?' The main outcome will be a deeper understanding of the internal working mechanisms of a higher organism. The project combines some of the most advanced systems technologies - genomics, proteomics, metabonomics, fluxomics and computational biology in a nov ....From genotype to phenotype - systems biology bridging the gap. This project is basic research at the forefront of international science and deals with a fundamental question of modern biology: 'How do genes determine the makeup of an organism?' The main outcome will be a deeper understanding of the internal working mechanisms of a higher organism. The project combines some of the most advanced systems technologies - genomics, proteomics, metabonomics, fluxomics and computational biology in a novel and unique way. This combination is in itself a major advancement of scientific methods that will accelerate discovery in the field of systems biology. In this respect, the project is a premier example of the priority goal Breakthrough Science and of the national research priority Frontier Technologies.Read moreRead less
Advances in Phylogenetic Comparative Methods. An understanding of our biota is impossible without understanding evolution, and developing ways to study it. The outcomes will be useful for biologists conducting theoretically important projects: understanding how and why species have evolved to be the way they are. In addition, the research will be of use to biologists studying more applied questions, such as how to predict whether certain species are likely to become endangered, go extinct, or wh ....Advances in Phylogenetic Comparative Methods. An understanding of our biota is impossible without understanding evolution, and developing ways to study it. The outcomes will be useful for biologists conducting theoretically important projects: understanding how and why species have evolved to be the way they are. In addition, the research will be of use to biologists studying more applied questions, such as how to predict whether certain species are likely to become endangered, go extinct, or whether certain species are likely to become invasive and feral. This research will maintain Australia as a leader in evolutionary biology by cementing strong collaborations with world-leading biologists and statisticians. Read moreRead less
Organophosphate pesticide degradation: evolved enzymes and biomimetics for bioremediation and medicine. Organophosphate (OP) pesticides are an indispensable part of modern agriculture - their use results in dramatically increased crop yields. However, they are toxic and can damage the environment and cause significant health problems. Enzymes are currently being used to treat runoff water that is contaminated with OPs. The same enzymes also have the potential to aid in the treatment of OP poison ....Organophosphate pesticide degradation: evolved enzymes and biomimetics for bioremediation and medicine. Organophosphate (OP) pesticides are an indispensable part of modern agriculture - their use results in dramatically increased crop yields. However, they are toxic and can damage the environment and cause significant health problems. Enzymes are currently being used to treat runoff water that is contaminated with OPs. The same enzymes also have the potential to aid in the treatment of OP poisoning. However, OP degrading enzymes could be improved in many ways - we will evolve these enzymes to enhance their catalytic properties - to enable them to act more efficiently on an increased number of OPs. Read moreRead less