Mathematical models and bioinformatic analyses of bacterial genome evolution. Bacteria are vital agents in earth's biosphere, breaking down and synthesising a wide variety of compounds. Some bacteria cause disease; others are exploited for a range of biotechnological applications. Bacteria have a remarkable ability to survive and thrive in changing conditions. For example, pathogenic bacteria confronted by antibiotics easily evolve resistance to them. With the reality of climate change, we expec ....Mathematical models and bioinformatic analyses of bacterial genome evolution. Bacteria are vital agents in earth's biosphere, breaking down and synthesising a wide variety of compounds. Some bacteria cause disease; others are exploited for a range of biotechnological applications. Bacteria have a remarkable ability to survive and thrive in changing conditions. For example, pathogenic bacteria confronted by antibiotics easily evolve resistance to them. With the reality of climate change, we expect more rapid shifts in the structure of bacterial communities, possibly leading to the emergence of new pathogens. The benefits of this project are to discover how the genetic structure of bacteria confer this flexibility, and to help keep Australia at the forefront of research in bioinformatics and mathematical biology.
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Social insect behaviour: the importance of individual-decision making and information transfer. Insect societies are complex systems. Understanding complex systems is often hampered by our inability to study the individual units that comprise the system without also disturbing the system. Insect societies are unique in that the individual insects can be studied within their natural setting. This project will study foraging behaviour of honey bees with respect to individual decision-making and in ....Social insect behaviour: the importance of individual-decision making and information transfer. Insect societies are complex systems. Understanding complex systems is often hampered by our inability to study the individual units that comprise the system without also disturbing the system. Insect societies are unique in that the individual insects can be studied within their natural setting. This project will study foraging behaviour of honey bees with respect to individual decision-making and information transfer. In doing so we will obtain insights in the working of other, less accessible, complex systems such as the mammalian brain or the Australian economy.Read moreRead less
Biophysics of the brain’s waste disposal system: Understanding why we sleep. This project aims to develop a new biophysical model of the brain, founded on the recently discovered glymphatic system responsible for waste disposal during sleep. It sets out to formulate, analyse, and validate rigorous new multiscale quantitative modelling – to advance the study of sleep and brain clearance dynamics, at timescales from hours to decades. Among expected outcomes are powerful models ready for applicatio ....Biophysics of the brain’s waste disposal system: Understanding why we sleep. This project aims to develop a new biophysical model of the brain, founded on the recently discovered glymphatic system responsible for waste disposal during sleep. It sets out to formulate, analyse, and validate rigorous new multiscale quantitative modelling – to advance the study of sleep and brain clearance dynamics, at timescales from hours to decades. Among expected outcomes are powerful models ready for application at both population and individual level, and testable predictions concerning the sleep patterns that lead to aggregation of waste in the brain and eventual cognitive decline. Project outcomes should also benefit society and the economy though translation into interventions for sleep disturbance – in future applied research.Read moreRead less
Reading the sequence of a single molecule of DNA . This project seeks to develop technology capable of accurately reading the sequence of a single DNA molecule for the first time. This is possible by combining state-of-the-art methods in DNA self-assembly, single-molecule fluorescence microscopy and bioelectronics, to overcome fundamental limits in current technologies.
The outcome of accurate DNA sequencing at single molecule resolution, promises ground-breaking biological insight from a more ....Reading the sequence of a single molecule of DNA . This project seeks to develop technology capable of accurately reading the sequence of a single DNA molecule for the first time. This is possible by combining state-of-the-art methods in DNA self-assembly, single-molecule fluorescence microscopy and bioelectronics, to overcome fundamental limits in current technologies.
The outcome of accurate DNA sequencing at single molecule resolution, promises ground-breaking biological insight from a more fine-grained view of the genetic world, game-changing technologies such as point-of-care genomics and in turn a substantial impact on the rapidly growing multi-billion-dollar DNA sequencing market. Read moreRead less
Understanding animals through their movement. This project aims to develop a suite of analytical methods to understand animals' behaviour through their movement patterns. Animal movement patterns encode detailed information about their behavioural state. Collecting and analysing animal movement trajectories can provide us with completely new insights to behaviour. Recent developments in bio-logging technologies have provided an incredible amount of rich data on free-ranging animals. This project ....Understanding animals through their movement. This project aims to develop a suite of analytical methods to understand animals' behaviour through their movement patterns. Animal movement patterns encode detailed information about their behavioural state. Collecting and analysing animal movement trajectories can provide us with completely new insights to behaviour. Recent developments in bio-logging technologies have provided an incredible amount of rich data on free-ranging animals. This project will develop a suite of analytical techniques to interrogate this data through a combination of approaches, from fine scale experiments in the laboratory to tracking animal trajectories from the International Space Station. The findings will deliver major benefits to the broader community by transforming our ability to manage and conserve animal stocks.Read moreRead less
Sexual conflict and the evolution of nuptial gifts. This project aims to understand how sexual conflict drives the evolution of “manipulative” nuptial gifts in male arthropods and how females respond to ingesting these gifts. Nuptial food gifts comprise materials (other than sperm) that are offered by males to females to consume at mating, and are an integral feature of the mating systems of a wide variety of arthropods. The project will study the decorated cricket, a species where males produce ....Sexual conflict and the evolution of nuptial gifts. This project aims to understand how sexual conflict drives the evolution of “manipulative” nuptial gifts in male arthropods and how females respond to ingesting these gifts. Nuptial food gifts comprise materials (other than sperm) that are offered by males to females to consume at mating, and are an integral feature of the mating systems of a wide variety of arthropods. The project will study the decorated cricket, a species where males produce a nuptial food gift that contains a cocktail of chemicals known to influence female reproduction when eaten. The project is expected to strengthen Australia’s international standing in evolutionary research and help train the next generation of evolutionary biologists.Read moreRead less
Statistical methods and tools for integrative microarray analysis. Tools used for biological and medical research have been evolving and there has been an increase in high-throughput technologies such as genome sequencing and DNA microarray. The growing number of entries and the increasing availability of public microarray repositories and other sequence databases have generated the new challenge of developing tools to efficiently integrate data by different research groups. This research provi ....Statistical methods and tools for integrative microarray analysis. Tools used for biological and medical research have been evolving and there has been an increase in high-throughput technologies such as genome sequencing and DNA microarray. The growing number of entries and the increasing availability of public microarray repositories and other sequence databases have generated the new challenge of developing tools to efficiently integrate data by different research groups. This research provides new statistical methods to integrate different data sets. Its application in the biomedical field will allow researchers to effectively interpret the myriad of data generated within the community.Read moreRead less
On the move: the study of self-organised movement of animal groups with and without leadership. This project will uncover the common principles that control the movement of large groups of organisms. We will focus on swarming honey bees, hopping bands of billions of locusts and millions of crickets marching in unison. The outcomes of our research will be broadly applicable to other collective phenomena, even to traffic and crowd control in humans.
The nutritional geometry of parental diet. This project aims to investigate the effects of ancestors’ diet on descendants’ development and performance. Recognition that an individual’s diet can affect its descendants’ features and health influences biology and medicine, but limitations of conventional research methodologies make understanding such effects incomplete. The Nutritional Geometry framework enables researchers to analyse effects of diet composition as complex response surfaces, and ha ....The nutritional geometry of parental diet. This project aims to investigate the effects of ancestors’ diet on descendants’ development and performance. Recognition that an individual’s diet can affect its descendants’ features and health influences biology and medicine, but limitations of conventional research methodologies make understanding such effects incomplete. The Nutritional Geometry framework enables researchers to analyse effects of diet composition as complex response surfaces, and has recently been used in research on parental diet effects. Building on this breakthrough, this project intends to analyse the effects of ancestors’ diet, and test hypotheses relevant to evolution, ecology and human health.Read moreRead less
Can sexual conflict contribute to a resolution of the paradox of sex? Despite over a century of research, it remains unclear why most animals can reproduce only via sex. An exciting new hypothesis proposes that sexual conflict can promote sexual reproduction and inhibit asexual strategies, suggesting a potential solution to this long-standing paradox. Building on my research expertise, and using a native Australian insect species in which the role of sexual conflict can be studied in natural pop ....Can sexual conflict contribute to a resolution of the paradox of sex? Despite over a century of research, it remains unclear why most animals can reproduce only via sex. An exciting new hypothesis proposes that sexual conflict can promote sexual reproduction and inhibit asexual strategies, suggesting a potential solution to this long-standing paradox. Building on my research expertise, and using a native Australian insect species in which the role of sexual conflict can be studied in natural populations, this ambitious project aims to test this hypothesis for the first time. This research will expand knowledge in the biological sciences by helping to answer one of the most challenging questions in evolutionary biology. This work will also contribute to efforts to monitor Australia's unique insect fauna.Read moreRead less