A Grid based platform for multi-scaled biological simulation. Heart disease currently affects over 3.5 million Australians. In 2006 it claimed the lives of almost 46,000 Australians (34% of all deaths). We will develop enabling technology that underpins cardiac disease research, offering potential for new treatments and pharmaceutical therapies. Even a small improvement in this area can translate into significant national benefit. Further, the mathematical techniques and software tools we will d ....A Grid based platform for multi-scaled biological simulation. Heart disease currently affects over 3.5 million Australians. In 2006 it claimed the lives of almost 46,000 Australians (34% of all deaths). We will develop enabling technology that underpins cardiac disease research, offering potential for new treatments and pharmaceutical therapies. Even a small improvement in this area can translate into significant national benefit. Further, the mathematical techniques and software tools we will develop, whilst focused on heart tissue, will have broader applicability, and may underpin advancements in other disciplines. Finally, we expect that the software solutions and infrastructure will have both commercial and strategic value in their own right.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0668502
Funder
Australian Research Council
Funding Amount
$500,000.00
Summary
Queensland Computational Grid Enhancement Project. State-of-the-art computational facilities will be made available to enhance research outcomes in vital areas such as environmental and sustainability modelling, security and medical engineering and thus play an important role in advancing scientific and engineering discovery within Queensland and Australia. The new computational systems will be made available on a Queensland wide basis through the Queensland Parallel Supercomputing Foundation an ....Queensland Computational Grid Enhancement Project. State-of-the-art computational facilities will be made available to enhance research outcomes in vital areas such as environmental and sustainability modelling, security and medical engineering and thus play an important role in advancing scientific and engineering discovery within Queensland and Australia. The new computational systems will be made available on a Queensland wide basis through the Queensland Parallel Supercomputing Foundation an initiative supported by Queensland universities and the State Government. The new infrastructure will support more than 390 researchers, is consistent with the national supercomputing framework and directly supports ARC research that addresses all four key national research priorities.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0453501
Funder
Australian Research Council
Funding Amount
$406,097.00
Summary
A Computational Research Grid Serving Regional and Metropolitan Queensland. This project will advance scientific discovery through the development of an integrated, user-friendly computational grid. It significantly enhances Queensland's research capability and infrastructure by delivering state-of-the-art computational resources to researchers at the collaborating institutions and other Queensland and Australia researchers. New supercomputer systems will be integrated into a Queensland wide com ....A Computational Research Grid Serving Regional and Metropolitan Queensland. This project will advance scientific discovery through the development of an integrated, user-friendly computational grid. It significantly enhances Queensland's research capability and infrastructure by delivering state-of-the-art computational resources to researchers at the collaborating institutions and other Queensland and Australia researchers. New supercomputer systems will be integrated into a Queensland wide computational grid being developed by the Queensland Parallel Supercomputing Foundation - an initiative supported by the Queensland State Government. New grid technologies will be employed so that the highest level of support is provided to researchers. This ensures that the facility is used effectively, allowing high-quality research to be efficiently conducted.Read moreRead less
Computationally Modelling a Volcano: Flow and Stability. Mainland Australia is fortunate not to suffer directly from active volcanism. However, this does not mean volcanoes are of little importance. The products of ancient eruptions can define the wealth of a nation. But they are also highly destructive and there are currently 30 active volcanoes capable of generating a tsunami that could affect Australia. Understanding the physical processes using computational models is essential to save lives ....Computationally Modelling a Volcano: Flow and Stability. Mainland Australia is fortunate not to suffer directly from active volcanism. However, this does not mean volcanoes are of little importance. The products of ancient eruptions can define the wealth of a nation. But they are also highly destructive and there are currently 30 active volcanoes capable of generating a tsunami that could affect Australia. Understanding the physical processes using computational models is essential to save lives and help us benefit from their products. This is a relatively new research field and owing to the resources in Australia, our research team has the potential to be at the forefront. There is also the capability to build and impressive research team within the University of Queensland.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE120100163
Funder
Australian Research Council
Funding Amount
$375,000.00
Summary
Modelling and simulation of instabilities in unsaturated soils due to wetting. Ground instabilities due to wetting are a critical issue that will be investigated through this project via the development of risk assessment tools. A rational engineering approach and calculation framework will be developed in order to predict failures and facilitate the design of new safer structures.
Stochastic Modelling of Genetic Regulatory Networks: Subtitle - Genetic Regulation is a Noisy Business. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in ....Stochastic Modelling of Genetic Regulatory Networks: Subtitle - Genetic Regulation is a Noisy Business. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in cellular processes. This project will explore these roles and will develop an integrated complex systems modelling, simulation and visualisation framework. This will be used on an exemplar application for lineage commitment in haematopoiesis and for exploring and validating genetic regulatory models in general.Read moreRead less
Multiscale stochastic modelling of genetic regulatory mechanisms. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in cellular processes. This project will ex ....Multiscale stochastic modelling of genetic regulatory mechanisms. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in cellular processes. This project will explore these roles and will develop an integrated complex systems modelling, simulation and visualisation framework for exploring and validating genetic regulatory models in general. This will be used on an exemplar application for understanding the induction process in lambda phage.Read moreRead less
A multi-scale approach for modelling coupled transport in heterogeneous and anisotropic porous media. Mathematical Sciences foster interdisciplinary collaboration and underpin fundamental understanding of significant national/international research priorities in science and technology. This world-class team will advance knowledge in modelling complex systems ensuring the competitiveness of Australian research in this important field. A key outcome is a multi-scale computational strategy that can ....A multi-scale approach for modelling coupled transport in heterogeneous and anisotropic porous media. Mathematical Sciences foster interdisciplinary collaboration and underpin fundamental understanding of significant national/international research priorities in science and technology. This world-class team will advance knowledge in modelling complex systems ensuring the competitiveness of Australian research in this important field. A key outcome is a multi-scale computational strategy that can be used by engineers in Australia and France to simulate transport phenomena in porous media, which have significant environmental impact. The research will lead to publications in scientific journals and communications at national/international conferences. Research training of postdocs and PhD students is another excellent outcome of the project.Read moreRead less
Effective and accurate model dynamics, deterministic and stochastic, across multiple space and time scales. A persistent feature of complex systems in engineering and science is the emergence of macroscopic, coarse grained, coherent behaviour from the interactions of microscopic agents (molecules, cells, grains) and with their environment. In current modeling, ranging from ecology to materials science, the underlying microscopic mechanisms are often known, but the closures to translate microscal ....Effective and accurate model dynamics, deterministic and stochastic, across multiple space and time scales. A persistent feature of complex systems in engineering and science is the emergence of macroscopic, coarse grained, coherent behaviour from the interactions of microscopic agents (molecules, cells, grains) and with their environment. In current modeling, ranging from ecology to materials science, the underlying microscopic mechanisms are often known, but the closures to translate microscale knowledge to a system level macroscopic description are rarely available in closed form. Our novel methodology will explore this stumbling block, and promises to radically change the modeling, exploration and understanding of multiscale complex system behaviour.Read moreRead less
Diffusion and transport of saltwater in coastal aquifers. Saltwater intrusion is a severe environmental problem in coastal regions of Australia, resulting in loss of agricultural land at an alarming rate. This project aims to develop a three-dimensional mathematical model for the simulation and prediction of saltwater intrusion into complex coastal aquifers based on recent advances in the theory of anomalous diffusion, stochastic modelling and numerical methods. The parameters of the model such ....Diffusion and transport of saltwater in coastal aquifers. Saltwater intrusion is a severe environmental problem in coastal regions of Australia, resulting in loss of agricultural land at an alarming rate. This project aims to develop a three-dimensional mathematical model for the simulation and prediction of saltwater intrusion into complex coastal aquifers based on recent advances in the theory of anomalous diffusion, stochastic modelling and numerical methods. The parameters of the model such as hydraulic conductivity and porosity will be estimated using multifractal techniques based on field data at the microscale. Once validated from measurements, the model will be used directly for resource management and planning.Read moreRead less