A genetic analysis of the role of an atypical hexokinase in gene regulation. This project addresses a question which is relevant to all living things-how do changes in the environment of a cell bring about a change in gene expression? The aim of this project is to investigate the role of hexokinases in gene regulation by studying the Aspergillus nidulans xprF gene, which encodes an an unusual hexokinase. Hexokinases are thought to be the glucose sensors in plants, animals and fungi, and play a ....A genetic analysis of the role of an atypical hexokinase in gene regulation. This project addresses a question which is relevant to all living things-how do changes in the environment of a cell bring about a change in gene expression? The aim of this project is to investigate the role of hexokinases in gene regulation by studying the Aspergillus nidulans xprF gene, which encodes an an unusual hexokinase. Hexokinases are thought to be the glucose sensors in plants, animals and fungi, and play a role in the development of diabetes in humans. In plants, sugars affect many processes including growth, flowering, photosynthesis, nitrogen metabolism, starch synthesis, pigmentation and response to pathogens.Read moreRead less
Plasmid maintenance and interactions with the host cell and its genome. Plasmids are extrachromosomal genetic elements that play a central role in the evolution of bacteria. They are the most dynamic component of the bacterial genome, augmenting the host chromosome by conferring a range of significant phenotypes that facilitate environmental adaptation. This project aims to elucidate fundamental aspects of the relationship between plasmids and their bacterial hosts. Significant outcomes include ....Plasmid maintenance and interactions with the host cell and its genome. Plasmids are extrachromosomal genetic elements that play a central role in the evolution of bacteria. They are the most dynamic component of the bacterial genome, augmenting the host chromosome by conferring a range of significant phenotypes that facilitate environmental adaptation. This project aims to elucidate fundamental aspects of the relationship between plasmids and their bacterial hosts. Significant outcomes include understanding the molecular basis of efficient plasmid inheritance in bacterial populations, and exploration of the innovative hypothesis that plasmids modulate expression of the host chromosome, a possibility that would profoundly alter our view of how plasmids influence host phenotype.Read moreRead less
Can eco-evolutionary theories explain outcomes of microbiome coalescence . Environmental microbial communities are among the most abundant and diverse natural communities, responsible for many ecologically and economically important ecosystem functions, including primary productivity and climate regulation. This project aims to identify the biotic and abiotic factors that regulate community and functional outcomes of microbiome coalescence (the mixing of two different communities) caused by natu ....Can eco-evolutionary theories explain outcomes of microbiome coalescence . Environmental microbial communities are among the most abundant and diverse natural communities, responsible for many ecologically and economically important ecosystem functions, including primary productivity and climate regulation. This project aims to identify the biotic and abiotic factors that regulate community and functional outcomes of microbiome coalescence (the mixing of two different communities) caused by natural and anthropogenic activities. The outcomes will provide a unifying ecological framework to predict variation in microbiomes across different scales, ecosystem types and disturbances, and will generate critical knowledge for the development of effective microbiome products, a rapidly growing industryRead moreRead less
The development of a two-colour flow cytometric assay for the detection of whole cell biosensors in environmental samples. Macquarie University and the University of Copenhagen have expertise in fluorescence detection and whole cell biosensors respectively. The project will take advantage of these skills and develop a sensitive assay for monitoring biosensor bacteria in soil. The technology will be significant as it will enable real time analysis of antibiotic production in situ through the de ....The development of a two-colour flow cytometric assay for the detection of whole cell biosensors in environmental samples. Macquarie University and the University of Copenhagen have expertise in fluorescence detection and whole cell biosensors respectively. The project will take advantage of these skills and develop a sensitive assay for monitoring biosensor bacteria in soil. The technology will be significant as it will enable real time analysis of antibiotic production in situ through the detection of GFP expression. This work will then be used to isolate new antibiotic produces and will be extended to research into the bioavailability of toxic compounds and stress. An existing collaboration between the two institutions will be extended enabling the transfer and application of biosensor technology to Australia.Read moreRead less
Structural analysis and functional inactivation of bacterial transcription complexes. RNA polymerase is an essential enzyme in all living cells. Its role is to convert the genetic information stored in genes into a message that can be converted into protein. As such, the bacterial RNA polymerase represents an ideal target for the development of new antibiotics which will be important in maintaining the health of the Australian community and also in protecting the community from the very real thr ....Structural analysis and functional inactivation of bacterial transcription complexes. RNA polymerase is an essential enzyme in all living cells. Its role is to convert the genetic information stored in genes into a message that can be converted into protein. As such, the bacterial RNA polymerase represents an ideal target for the development of new antibiotics which will be important in maintaining the health of the Australian community and also in protecting the community from the very real threat of bioterrorism organisms such as anthrax. This project is designed to identify molecules for development as new antibiotics that are effective against RNA polymerase.Read moreRead less
Decoding regulatory RNA function in bacteria. All complex biological processes in bacterial cells appear to utilise regulatory small RNAs to control gene expression, but we lack a systems-level understanding of their functions and mechanisms of control. This proposal aims to address this fundamental knowledge gap using machine learning and cutting-edge, systems-level techniques to determine how small RNA sequence and structure determines function. Small RNAs have been found to control a broad ra ....Decoding regulatory RNA function in bacteria. All complex biological processes in bacterial cells appear to utilise regulatory small RNAs to control gene expression, but we lack a systems-level understanding of their functions and mechanisms of control. This proposal aims to address this fundamental knowledge gap using machine learning and cutting-edge, systems-level techniques to determine how small RNA sequence and structure determines function. Small RNAs have been found to control a broad range of traits including metabolism, biofilm formation, antibiotic tolerance, and virulence. The work proposed here will enhance our ability to predict and control bacterial gene expression with potential future impacts on bioproduction, synthetic biology, and veterinary and medical microbiology.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE140100032
Funder
Australian Research Council
Funding Amount
$1,000,000.00
Summary
A ToF-SIMS facility for elemental and isotopic imaging of ultra-fine features for researchers in east Australia. A time of flight secondary ion mass spectrometer facility for elemental and isotopic imaging of ultra-fine features: Microbiology has long been an area of strength in Australian science. With recent technological advances microbiology has entered a new golden age unveiling an extraordinary level of diversity and the central role of microbes in global biogeochemistry. The 'omics' era i ....A ToF-SIMS facility for elemental and isotopic imaging of ultra-fine features for researchers in east Australia. A time of flight secondary ion mass spectrometer facility for elemental and isotopic imaging of ultra-fine features: Microbiology has long been an area of strength in Australian science. With recent technological advances microbiology has entered a new golden age unveiling an extraordinary level of diversity and the central role of microbes in global biogeochemistry. The 'omics' era is generating endless hypotheses regarding geochemical processes carried out by microbes and this necessitates the application of advanced technologies to generate empirical support. Time of flight secondary ion mass spectrometry has emerged as a key tool to unravel elemental cycling carried out by microorganisms in mixed species communities in contexts ranging from terrestrial to marine ecology and from groundwater bioremediation to biogas production biotechnologies.Read moreRead less
Australia's freshwater ecosystems: how microbial diversity and functionality influence harmful cyanobacterial blooms. Toxic cyanobacterial blooms are a constant threat to safe drinking water supplies. A bloom is a poorly understood interaction between many species and the environment. This project will investigate the entire microbial population and their physiologies present in a bloom event in order to identify potential targets for their management.