Mechanistic characterisation of genotype x environment interactions in sorghum and arabidopsis. Sorghum is an economically important cereal crop for Australia. In Australia, sorghum is used as a staple animal feed and it is very important for the live stock industry. With the predicted changes of temperature and rainfall patterns due to climate change, negative effects on sorghum yield are expected, which can have adverse effects on Australian economy. Our studies will identify and mark genes th ....Mechanistic characterisation of genotype x environment interactions in sorghum and arabidopsis. Sorghum is an economically important cereal crop for Australia. In Australia, sorghum is used as a staple animal feed and it is very important for the live stock industry. With the predicted changes of temperature and rainfall patterns due to climate change, negative effects on sorghum yield are expected, which can have adverse effects on Australian economy. Our studies will identify and mark genes that regulate flowering and seed production in sorghum in response to changes in temperature and light interactions. These studies will help to develop novel sorghum varieties with desirable characters through plant-breeding programmes.Read moreRead less
Searching for genes influencing reading ability using multivariate genomic linkage analysis and allelic association analysis. Following from the replicated linkages of reading disability to loci on chromosomes 6 & 18, this study examines linkage of these same regions to a range of reading measures in an unselected sample of twins and siblings. Preliminary univariate linkage scans of two neuropsychological reading indices suggest linkage to loci on two chromosomes. Our next step is to include rea ....Searching for genes influencing reading ability using multivariate genomic linkage analysis and allelic association analysis. Following from the replicated linkages of reading disability to loci on chromosomes 6 & 18, this study examines linkage of these same regions to a range of reading measures in an unselected sample of twins and siblings. Preliminary univariate linkage scans of two neuropsychological reading indices suggest linkage to loci on two chromosomes. Our next step is to include reading measures of orthographic skill and phonological decoding in a multivariate linkage analysis with the other reading indices and with measures of IQ and academic achievement. Multivariate linkage increases the power of detecting quantitative traits and assists in defining the phenotype related to the locus. We then aim to identify the functional gene through allelic association analysis. Identification of QTLs for reading ability may lead to practical outcomes such as the behavioural and biomedical management of reading deficits, which may then benefit areas such as scholastic achievement.Read moreRead less
Locating genes for elementary and complex cognitive abilities using genetic linkage and association analysis. This study aims to identify genes influencing cognitive ability by using multiple measures of cognition in combination with genetic linkage and association analyses. Multiple measures can increase the statistical power of finding a gene and provide a more comprehensive framework for charting the functional role of genes. The outcome of locating genes for cognition will provide insight i ....Locating genes for elementary and complex cognitive abilities using genetic linkage and association analysis. This study aims to identify genes influencing cognitive ability by using multiple measures of cognition in combination with genetic linkage and association analyses. Multiple measures can increase the statistical power of finding a gene and provide a more comprehensive framework for charting the functional role of genes. The outcome of locating genes for cognition will provide insight into biological functions of the brain which affect human intellect, and will have downstream practical applications which could include better educational, behavioural and biomedical management of learning and memory disorders, and of other intellectual disabilities.Read moreRead less
Quantitative and Molecular Genetic Analysis of Cognition. This study attempts to unravel the pathways through which genes may exert their influence on cognitive processes by identifying some of the genes associated with normal variation in cognitive ability. Using the cognitive phenotypes we have collected, both linkage and association analysis will be used to find QTLs (locations on the chromosomes at which specific genes contribute to a quantitative trait) associated with processing speed and ....Quantitative and Molecular Genetic Analysis of Cognition. This study attempts to unravel the pathways through which genes may exert their influence on cognitive processes by identifying some of the genes associated with normal variation in cognitive ability. Using the cognitive phenotypes we have collected, both linkage and association analysis will be used to find QTLs (locations on the chromosomes at which specific genes contribute to a quantitative trait) associated with processing speed and other specific abilities. The research will enhance our understanding of the biological mechanisms influencing brain function and paves the way for the genetic dissection of the brain.Read moreRead less
Identifying genes causing thermal evolution of ectotherm body size. Cold-blooded animals increase in body size as they are found in populations at greater distances from the equator. These patterns are due to populations adapting to temperature. The aim of this project is to identify the genes involved in this adaptation process. We will do this by taking advantage of a well-studied body size cline in the vinegar fly on the east coast of Australia, and by building on an international collaborati ....Identifying genes causing thermal evolution of ectotherm body size. Cold-blooded animals increase in body size as they are found in populations at greater distances from the equator. These patterns are due to populations adapting to temperature. The aim of this project is to identify the genes involved in this adaptation process. We will do this by taking advantage of a well-studied body size cline in the vinegar fly on the east coast of Australia, and by building on an international collaboration between a leading UK and two Australian research groups. In doing so we will provide an explanation at the molecular level for one of the great unresolved phenomena in biology: why do cold-blooded animals get bigger in the cold? The research also leads to the potential to manipulate body size in animals.Read moreRead less
A Genomic Dissection of Natural Adaptation in Mate Recognition. Adaptation is a fundamental area of evolutionary biology but we know surprisingly little about its underlying genetic basis. As a process, adaptation poses several challenges for Australian society including bacterial evolution of resistance to antibiotics, HIV resistance to antiviral medications and the evolution of pesticide resistance in agricultural pests. This study will use a model system and genomic tools to test theoretical ....A Genomic Dissection of Natural Adaptation in Mate Recognition. Adaptation is a fundamental area of evolutionary biology but we know surprisingly little about its underlying genetic basis. As a process, adaptation poses several challenges for Australian society including bacterial evolution of resistance to antibiotics, HIV resistance to antiviral medications and the evolution of pesticide resistance in agricultural pests. This study will use a model system and genomic tools to test theoretical models of the genetic basis of adaptation. This integrative approach will enhance Australia's research profile in genomics and evolutionary biology. The project will provide emerging scientists with skills in areas including genomics, molecular biology, evolutionary biology and agricultural genetics.Read moreRead less
Maximising knowledge from dense SNP (single nucleotide polymorphisms) data using multi-locus analysis. The genomics revolution has made it possible to measure thousands of DNA variants in individuals. This information can be used in many ways, including to find genes that cause variation between individuals in a population and to estimate the size of the population in the past. Our study will lead an analysis method that will extract more information out of such data. This will improve the effi ....Maximising knowledge from dense SNP (single nucleotide polymorphisms) data using multi-locus analysis. The genomics revolution has made it possible to measure thousands of DNA variants in individuals. This information can be used in many ways, including to find genes that cause variation between individuals in a population and to estimate the size of the population in the past. Our study will lead an analysis method that will extract more information out of such data. This will improve the efficiency of gene mapping methods, including applications in humans for traits related to productive ageing and a healthy start to life, will allow the estimation of genetic relatedness and genetic variation in natural populations, and will lead to more efficient selection programs in agricultural populations.Read moreRead less
Locating genes for cognitive traits using linkage and association analyses. Our study is the 1st in the world to find significant linkage for IQ.The dataset is one of only 2 such in the world (based on sample size, range & type of measures).Identifying genes for cognitive ability using healthy subjects is important in understanding individual differences in normal cognitive functioning, but it may also provide clues into the underlying mechanisms of impaired cognitive ability. Diverging conditio ....Locating genes for cognitive traits using linkage and association analyses. Our study is the 1st in the world to find significant linkage for IQ.The dataset is one of only 2 such in the world (based on sample size, range & type of measures).Identifying genes for cognitive ability using healthy subjects is important in understanding individual differences in normal cognitive functioning, but it may also provide clues into the underlying mechanisms of impaired cognitive ability. Diverging conditions like reading disorder, schizophrenia, depression, alcoholism, and dementia all share deficits in cognitive ability.Downstream practical applications of identifying 'genes for cognition' include better educational, behavioural and biomedical management of learning and memory disorders, and other intellectual disabilities.Read moreRead less
Drosophila Quantitative Genomics. This research proposal will be a key element in the emerging program in evolutionary and ecological functional genomics at the University of Queensland. Our studies utilize modern genomics approaches to address diverse national priorities from conservation of biological resources in the face of climate change, to understanding how genetic history contributes to drug susceptibility. The research will contribute to the intellectual foundation upon which rigorous ....Drosophila Quantitative Genomics. This research proposal will be a key element in the emerging program in evolutionary and ecological functional genomics at the University of Queensland. Our studies utilize modern genomics approaches to address diverse national priorities from conservation of biological resources in the face of climate change, to understanding how genetic history contributes to drug susceptibility. The research will contribute to the intellectual foundation upon which rigorous environmental and biomedical research is built. Social impact will be seen in the training of a new generation of integrative genome biologists, and the shaping of attitudes toward the role of genetics in human biology.Read moreRead less
Why is most of the genetic variance for complex traits undetected by large powerful screens of common variants? The genomics revolution has made it possible to measure thousands of DNA variants in individuals. These variants have been associated with phenotypic outcomes in a range of species. Paradoxically, even very large studies have only accounted for a fraction of the resemblance between relatives that we know exist. Our study will test three specific hypotheses to explain this paradox. A be ....Why is most of the genetic variance for complex traits undetected by large powerful screens of common variants? The genomics revolution has made it possible to measure thousands of DNA variants in individuals. These variants have been associated with phenotypic outcomes in a range of species. Paradoxically, even very large studies have only accounted for a fraction of the resemblance between relatives that we know exist. Our study will test three specific hypotheses to explain this paradox. A better understanding about the genetic architecture for complex traits will improve the efficiency of gene mapping methods, including applications in humans for traits related to productive ageing and a healthy start to life, will lead to more efficient selection programs in agricultural populations and will inform us with respect to past evolutionary events.Read moreRead less