Methods to infer dense genomic information from sparsely genotyped populations. Prediction of phenotype based on DNA polymorphisms or sequence has important applications such as prediction of disease risk in human medicine and prediction of genetic value in plant or animal breeding. This project will enhance precision and lower the cost of association studies leading to substantial increase in accuracy of such predictions. This will allow more effective genetic improvement, particularly of diff ....Methods to infer dense genomic information from sparsely genotyped populations. Prediction of phenotype based on DNA polymorphisms or sequence has important applications such as prediction of disease risk in human medicine and prediction of genetic value in plant or animal breeding. This project will enhance precision and lower the cost of association studies leading to substantial increase in accuracy of such predictions. This will allow more effective genetic improvement, particularly of difficult but important traits such as disease resistance, reduced green-house gas emissions and product quality. The same methods can be extended to improve genetic improvement in plants and better prediction of human disease risk. Read moreRead less
Genome-wide determination of Puccinia psidii s.l. rust resistance in eucalypts. Recently, guava rust was detected in Australia, posing significant risks to native flora, plantations, and timber exports. Scientists from The University of Melbourne and Victorian Department of Primary Industries together with tree breeders, forest growers and forest managers aim to use tree genomics rust resistance breeding to enable management and operational responses and inform policy development.
Developing new methods to retrieve and analyse preserved genetic information. This project will position Australia at the leading edge of research into preserved DNA, and will use innovative molecular biology approaches to develop a range of new forensic, archaeological and medical applications. It will build Australian knowledge and scientific capacity by developing core expertise and training personnel in areas important for biosecurity, customs and quarantine, forensics/counter-terrorism, and ....Developing new methods to retrieve and analyse preserved genetic information. This project will position Australia at the leading edge of research into preserved DNA, and will use innovative molecular biology approaches to develop a range of new forensic, archaeological and medical applications. It will build Australian knowledge and scientific capacity by developing core expertise and training personnel in areas important for biosecurity, customs and quarantine, forensics/counter-terrorism, and studies of climate change. It will also create and foster research innovation in molecular biology with spin-offs for evolution, archaeology, medical and conservation biology research, and will also encourage involvement with the rapidly expanding field of genomics and bioinformatics.Read moreRead less
Identifying the diversity and evolution of loci associated with adaptation to aridity/heat and salinity in ancient cereal crops. This project will use ancient grains of wheat, barley and rye to find 'lost' genetic diversity at key genes associated with resistance to aridity, salt and disease. This project will make the proteins of key genes, and study their interaction with the environment over time by measuring ions in the grains to reveal the ancient environmental conditions.
Bronze Age textiles from Dong Son coffins in Vietnam. This multi-disciplinary project breaks new ground in Southeast Asian archaeology by incorporating excavation with the conservation and analysis of a unique assemblage of prehistoric textiles already located in Dong Son coffins in the Red River delta. In recognition of the cultural significance of the archaeological materials to Vietnam, conservators are involved in the excavation process to reduce physical damage and the loss of fragile mate ....Bronze Age textiles from Dong Son coffins in Vietnam. This multi-disciplinary project breaks new ground in Southeast Asian archaeology by incorporating excavation with the conservation and analysis of a unique assemblage of prehistoric textiles already located in Dong Son coffins in the Red River delta. In recognition of the cultural significance of the archaeological materials to Vietnam, conservators are involved in the excavation process to reduce physical damage and the loss of fragile materials during recovery. The research will also contribute to Southeast Asian (and Vietnamese) archaeology by providing some new insights into the cultural interaction between South China and Vietnam during the late
prehistoric period.Read moreRead less
Resolving the Genetics of Grain Pigmentation Traits in Rice . New critical knowledge will enable future breeding of quality black rice cultivars that can exploit the high UV Australian growing environment to enable domestic production of high-value, healthy black rice. The demand for functional foods with health benefits, including black rice, is increasing both domestically and internationally. The concentration of key functional compounds in black rice may be increased by growing optimised cul ....Resolving the Genetics of Grain Pigmentation Traits in Rice . New critical knowledge will enable future breeding of quality black rice cultivars that can exploit the high UV Australian growing environment to enable domestic production of high-value, healthy black rice. The demand for functional foods with health benefits, including black rice, is increasing both domestically and internationally. The concentration of key functional compounds in black rice may be increased by growing optimised cultivars under high-UV radiation, making Australia well placed to produce the highest quality black rice. Utilising a unique genetic resource this project will resolve how the interaction between crop genetics and the growing environment drives the concentration of functional compounds in black rice. Read moreRead less
Elucidating the genetic basis of newly evolved metabolic functions in yeast. Elucidating the genetic basis of newly evolved metabolic functions in yeast. This project intends to research how complex metabolic pathways originate and evolve. This project will use cutting edge genome sequencing and molecular techniques to elucidate the heritable genetic basis of Baker’s yeast, which has been the selectively evolved to use xylose as a sole carbon source: something vital for second generation biofuel ....Elucidating the genetic basis of newly evolved metabolic functions in yeast. Elucidating the genetic basis of newly evolved metabolic functions in yeast. This project intends to research how complex metabolic pathways originate and evolve. This project will use cutting edge genome sequencing and molecular techniques to elucidate the heritable genetic basis of Baker’s yeast, which has been the selectively evolved to use xylose as a sole carbon source: something vital for second generation biofuel production that wild yeast cannot do. This project will combine detailed molecular characterisation of highly adapted yeast strains with a novel "molecular palaeontology" approach to trace the evolutionary process and identify functionally significant loci under selection. Detailed characterisation of this trait will accelerate the development of future yeast strains and test fundamental evolutionary theories.Read moreRead less
Cultural change in its environmental context: exploring, interpreting, and managing archaeologically rich, large-scale cultural landscapes in the Mediterranean Basin. (1) Production of a Holocene climate history and evaluation of long-term human response to environmental change in Mediterranean to continental climate zones. (2) Development of relationships with international researchers, including leading scholars from Italy, Bulgaria, the United States, and the Netherlands. (3) Extension of Aus ....Cultural change in its environmental context: exploring, interpreting, and managing archaeologically rich, large-scale cultural landscapes in the Mediterranean Basin. (1) Production of a Holocene climate history and evaluation of long-term human response to environmental change in Mediterranean to continental climate zones. (2) Development of relationships with international researchers, including leading scholars from Italy, Bulgaria, the United States, and the Netherlands. (3) Extension of Australia's leadership in Mediterranean archaeology to the Balkans through building institutional relationships and initiating a presence in Bulgaria (arguably the most promising country in its region for archaeological research). (4) Development of innovative remote sensing methods for archaeological reconnaissance with wide applicability, including in Australian contexts and by other Australian research projects.Read moreRead less
FastStack - evolutionary computing to stack desirable alleles in wheat. This project aims to investigate rapid development of new, high-yielding wheat varieties with appropriate disease resistance. An emerging challenge in wheat breeding is how to stack desirable alleles for disease resistance, drought, and end-use quality into new varieties with high yielding backgrounds in the shortest time. As the number of known desirable alleles for these traits increases, the number of possible crossing c ....FastStack - evolutionary computing to stack desirable alleles in wheat. This project aims to investigate rapid development of new, high-yielding wheat varieties with appropriate disease resistance. An emerging challenge in wheat breeding is how to stack desirable alleles for disease resistance, drought, and end-use quality into new varieties with high yielding backgrounds in the shortest time. As the number of known desirable alleles for these traits increases, the number of possible crossing combinations that need to be considered increases. This project aims to use evolutionary computing with speed breeding and genomic selection, in the partners breeding program, to address this challenge. Potential outcomes will lead to more profitable wheat varieties for Australian growers, and expanded exports to high value markets that require quality grain.Read moreRead less
Northern connections-movement of birds between Australia and its near northern neighbours. This project will better enable Australia to meet its international treaty obligations on migratory birds and provide much needed data on patterns of migratory connectivity in northern Australia. These data are critical for the conservation and management of bird species that spend part of their life-cycle outside Australia. The outputs of the project will be used to assist decision makers with policy and ....Northern connections-movement of birds between Australia and its near northern neighbours. This project will better enable Australia to meet its international treaty obligations on migratory birds and provide much needed data on patterns of migratory connectivity in northern Australia. These data are critical for the conservation and management of bird species that spend part of their life-cycle outside Australia. The outputs of the project will be used to assist decision makers with policy and management decisions relevant to (1) targeted surveillance for exotic and emergent diseases of relevance to Australia and (2) the conservation and management of bird populations in Northern Australia.Read moreRead less