Computational Modeling of RNA Control Networks. One of the most exciting new ideas for understanding the regulation of gene expression involves the contribution of intronic and other non-protein coding RNAs to regulatory networks within cells. This novel role for intronic RNA is currently making headlines within the molecular biology community but has not yet been modelled computationally. The network of genetic regulatory interactions forms a complex system which is amenable to computational ....Computational Modeling of RNA Control Networks. One of the most exciting new ideas for understanding the regulation of gene expression involves the contribution of intronic and other non-protein coding RNAs to regulatory networks within cells. This novel role for intronic RNA is currently making headlines within the molecular biology community but has not yet been modelled computationally. The network of genetic regulatory interactions forms a complex system which is amenable to computational analysis. This project aims to extend current models to incorporate intronic RNA feedback control, complementing parallel studies in vivo, and computationally testing ideas essential to the theoretical understanding of the basis of life.Read moreRead less
High resolution single particle analysis of biological macromolecules. One of the great challenges of cell biology is to increase the rate of atomic resolution structure determination, particularly of membrane proteins and macromolecular assemblies. The current rate-limiting step is high quality crystal production. Our goal is to prove that protein structures can be determined to atomic resolution by single-particle analysis. 3D structures will be produced by computationally aligning high-resolu ....High resolution single particle analysis of biological macromolecules. One of the great challenges of cell biology is to increase the rate of atomic resolution structure determination, particularly of membrane proteins and macromolecular assemblies. The current rate-limiting step is high quality crystal production. Our goal is to prove that protein structures can be determined to atomic resolution by single-particle analysis. 3D structures will be produced by computationally aligning high-resolution electron microscope images of individual, randomly oriented molecules. The importance of this project is highlighted by the fact over 120,000 protein sequences are already databased, a number set to increase rapidly as new genome sequencing projects are completed.
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ARC Centre for Complex Systems. The Australian Centre for Complex Systems brings together leading researchers from several disciplines and institutions to conduct research on questions fundamental to understanding and managing complex systems. Its core research program, based on the theme of computation in and by networks of agents, has two interwoven strands. The science strand addresses questions about emergent properties, natural computation, and nonlinear dynamics. The engineering strand add ....ARC Centre for Complex Systems. The Australian Centre for Complex Systems brings together leading researchers from several disciplines and institutions to conduct research on questions fundamental to understanding and managing complex systems. Its core research program, based on the theme of computation in and by networks of agents, has two interwoven strands. The science strand addresses questions about emergent properties, natural computation, and nonlinear dynamics. The engineering strand addresses issues about methodology, modelling toolkits, and management and control. Practical applications are advanced via collaborative projects that address key issues in biology, environment, and socio-economics.Read moreRead less
An Automated Bioimaging System for High-Content Cell-Cycle Screening. 1) Providing a better understanding of the biological complexities
that will advance knowledge in life science research and facilitate the development of new anti-cancer drugs.
2) Supporting Australian academic institutions in a challenging field of innovative research through international, interdisciplinary collaborations, and publications in journals of high quality scientific research.
3) Providing research training ....An Automated Bioimaging System for High-Content Cell-Cycle Screening. 1) Providing a better understanding of the biological complexities
that will advance knowledge in life science research and facilitate the development of new anti-cancer drugs.
2) Supporting Australian academic institutions in a challenging field of innovative research through international, interdisciplinary collaborations, and publications in journals of high quality scientific research.
3) Providing research training in a research venture that requires expertise and collaboration in the disciplines of biology, engineering, computer science, and mathematics.
4) Bringing economic and social benefits for Australia by enhancing important industries and existing technologies in medicine, and biotechnology.
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Thinking Systems: Navigating Through Real and Conceptual Spaces. The project will provide fundamental insights into physical and conceptual spaces and develop applications in robotics and information systems. The project brings together national and international researchers to study how humans and other animals navigate: how trajectories through space are used to build maps, the neural bases of these mapping processes and how to use maps to achieve goals. The project will develop a new generati ....Thinking Systems: Navigating Through Real and Conceptual Spaces. The project will provide fundamental insights into physical and conceptual spaces and develop applications in robotics and information systems. The project brings together national and international researchers to study how humans and other animals navigate: how trajectories through space are used to build maps, the neural bases of these mapping processes and how to use maps to achieve goals. The project will develop a new generation of robots that can learn about the physical spaces they work in, and create concept-mapping systems that can map and navigate information spaces. Also, it will provide new insights into the mechanisms regulating human cognition and mental dysfunctions.Read moreRead less
Traversing a treacherous landscape: Modelling caterpillar movement and behaviour on whole plants at multiple scales. How caterpillars move on plants and where they feed is central to developing plants resistant to these insect pests. Our research program will generate computer models of caterpillar behaviour on virtual plants that interact in realistic ways with the changing structure of the plant as it grows, its micro-architecture and environment. We provide a set of tools that will form the ....Traversing a treacherous landscape: Modelling caterpillar movement and behaviour on whole plants at multiple scales. How caterpillars move on plants and where they feed is central to developing plants resistant to these insect pests. Our research program will generate computer models of caterpillar behaviour on virtual plants that interact in realistic ways with the changing structure of the plant as it grows, its micro-architecture and environment. We provide a set of tools that will form the cornerstone of important future research agendas in the ecology of foraging caterpillars, optimisation of insecticide spray application, and the development of novel genetically transformed plants for insect control central to the future of Australian agriculture.
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