Stochastic Modelling of Genetic Regulatory Networks: Subtitle - Genetic Regulation is a Noisy Business. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in ....Stochastic Modelling of Genetic Regulatory Networks: Subtitle - Genetic Regulation is a Noisy Business. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in cellular processes. This project will explore these roles and will develop an integrated complex systems modelling, simulation and visualisation framework. This will be used on an exemplar application for lineage commitment in haematopoiesis and for exploring and validating genetic regulatory models in general.Read moreRead less
Predicting Biodiversity from Population Dynamics. This research aims to deepen our understanding of how changes to the environment, including those attributable to human activities, influence the ecological and evolutionary mechanisms that generate and maintain biodiversity. This understanding is of urgent importance, in light of the predicted changes in climate and habitat over the next century, because biodiversity is critical to the proper functioning of ecosystems that human societies depend ....Predicting Biodiversity from Population Dynamics. This research aims to deepen our understanding of how changes to the environment, including those attributable to human activities, influence the ecological and evolutionary mechanisms that generate and maintain biodiversity. This understanding is of urgent importance, in light of the predicted changes in climate and habitat over the next century, because biodiversity is critical to the proper functioning of ecosystems that human societies depend upon. The graduate student involved in this research will have the opportunity to receive in-depth training as part of a cross-disciplinary collaboration that combines mathematics, ecology, evolution, and paleontology.
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Origin of animal sensory and nervous systems: a case study in cell type evolution. The origin of the nerve cell and the nervous system allowed the first animals to interact with their biotic and abiotic environment in rapid and complex ways. These capabilities are the primary agents for success in the animal kingdom, underpinning the ability to capture food, avoid predation, and find a mate. These same nerve cells have bestowed on the human brain cognitive abilities that have driven our biologic ....Origin of animal sensory and nervous systems: a case study in cell type evolution. The origin of the nerve cell and the nervous system allowed the first animals to interact with their biotic and abiotic environment in rapid and complex ways. These capabilities are the primary agents for success in the animal kingdom, underpinning the ability to capture food, avoid predation, and find a mate. These same nerve cells have bestowed on the human brain cognitive abilities that have driven our biological and cultural evolution. Despite the phenomenal importance of the nerve cell, we know almost nothing about its origin and early evolution. This basic research project seeks to make a major contribution towards addressing this gap in knowledge.Read moreRead less
Efficient Estimation of Statistical Models with Many Parameters. Statistical models are used extensively in business, engineering and the sciences to describe the behavior of systems subject to uncertainty. There are often many unknowns in such models and relatively little data to estimate them. The object of the research is to develop methods that make these statistical models practical to use. The research team will apply the methodology to solve problems in economics, finance, marketing and t ....Efficient Estimation of Statistical Models with Many Parameters. Statistical models are used extensively in business, engineering and the sciences to describe the behavior of systems subject to uncertainty. There are often many unknowns in such models and relatively little data to estimate them. The object of the research is to develop methods that make these statistical models practical to use. The research team will apply the methodology to solve problems in economics, finance, marketing and the analysis of gene expression data. The project will also train doctoral and postdoctoral students and enhance Australia's reputation for research excellence in the Statistical and Mathematical Sciences. Read moreRead less
Theory and Applications of Computer-Intensive Statistical Methods. The availability of powerful computing equipment has had a dramatic impact on statistical methods and thinking. It has motivated development of novel approaches to data analysis, whose conception
and appreciation, even their application, often demand sophisticated and complex theoretical methods. In this context, the project will develop new approaches to solving non-standard statistical problems. These techniques will eithe ....Theory and Applications of Computer-Intensive Statistical Methods. The availability of powerful computing equipment has had a dramatic impact on statistical methods and thinking. It has motivated development of novel approaches to data analysis, whose conception
and appreciation, even their application, often demand sophisticated and complex theoretical methods. In this context, the project will develop new approaches to solving non-standard statistical problems. These techniques will either have direct application to solving practical problems of national or community concern, or provide a better understanding of the nature of such problems.Read moreRead less
Saddlepoint approximation, likelihood analysis and ancestral graphs for strong and weak natural selection, genetic drift and population subdivision. Building new research strength in theoretical population genetics and related statistical techniques will enhance Australia's capability in harnessing the power of post-genomic information. Sophisticated statistical techniques that make smart use of genetic data are being developed in this project. The extent to which natural selection and migrati ....Saddlepoint approximation, likelihood analysis and ancestral graphs for strong and weak natural selection, genetic drift and population subdivision. Building new research strength in theoretical population genetics and related statistical techniques will enhance Australia's capability in harnessing the power of post-genomic information. Sophisticated statistical techniques that make smart use of genetic data are being developed in this project. The extent to which natural selection and migration affect current genetic polymorphism on a population level can be quantified using these new methods. New modeling provides a rigorous foundation with which to construct inference techniques currently beyond computational approaches to the data. Assessing selective effects on genetic mutations associated with human disease will be a consequence of this new statistical methodology.Read moreRead less
Mechanisms of action and expression of bioactive compounds produced by the surface associated marine bacterium Pseudoalteromonas tunicata. The marine surface-associated bacterium Pseudoalteromonas tunicata produces a number of bioactive metabolites that inhibit the colonisation and growth of common fouling organisms such as bacteria, fungi, algae and invertebrate larvae. The antibacterial and antifungal compounds represent novel metabolites active against a remarkable range of both medically and ....Mechanisms of action and expression of bioactive compounds produced by the surface associated marine bacterium Pseudoalteromonas tunicata. The marine surface-associated bacterium Pseudoalteromonas tunicata produces a number of bioactive metabolites that inhibit the colonisation and growth of common fouling organisms such as bacteria, fungi, algae and invertebrate larvae. The antibacterial and antifungal compounds represent novel metabolites active against a remarkable range of both medically and agriculturally important bacteria and fungi. This project aims to explore the identity, mode of action and regulation of expression of these compounds. This research proposal addresses several significant biological concepts and will lead to the development of novel environmentally friendly antifouling and antimicrobial technologies.Read moreRead less
Ecological significance of coral disease on the Great Barrier Reef. Coral disease has contributed significantly to the accelerating deterioration of coral reefs globally, but its impact on the Great Barrier Reef is unknown. This project will determine the prevalence of coral disease on the GBR and evaluate the potential threat it poses to reef health. It will build Australian capacity in the ecology and pathology of coral disease, an emergent global research priority, and provide an important ....Ecological significance of coral disease on the Great Barrier Reef. Coral disease has contributed significantly to the accelerating deterioration of coral reefs globally, but its impact on the Great Barrier Reef is unknown. This project will determine the prevalence of coral disease on the GBR and evaluate the potential threat it poses to reef health. It will build Australian capacity in the ecology and pathology of coral disease, an emergent global research priority, and provide an important benchmark for determining whether disease incidence is increasing. It will provide insights into potential links between environmental / anthropogenic stressors and disease incidence, and identify potential threats to coral reef health.Read moreRead less
Chemical Defenses Against Microbial Colonisation of Living Marine Surfaces. Microorganisms have a major impact on all ecosystems. Many of these effects are due to the formation of biofilms - cell clusters and their slime matrix - on living and non-living surfaces. Biofilm formation is often regulated by chemical signals. The aim of this project is to understand how naturally produced chemical signals mediate the formation of biofilms on surfaces of marine macroalgae (seaweeds) at both the eco ....Chemical Defenses Against Microbial Colonisation of Living Marine Surfaces. Microorganisms have a major impact on all ecosystems. Many of these effects are due to the formation of biofilms - cell clusters and their slime matrix - on living and non-living surfaces. Biofilm formation is often regulated by chemical signals. The aim of this project is to understand how naturally produced chemical signals mediate the formation of biofilms on surfaces of marine macroalgae (seaweeds) at both the ecological and molecular levels. By understanding colonisation of natural living surfaces, this project will lead directly to significant advances in control of microorganisms in a variety of applied areas (water treatment, biomaterials, antifouling).Read moreRead less
Aquatic eye design: sharks and rays as models of underwater colour and luminance vision. Sharks are usually assumed to be colour blind. We have discovered that they may in fact see colour very well and that the eyes of different species are adapted to their particular lifestyles. Our research will help to raise the profile of sharks and portray them as animals with advanced sensory systems and complex visual behaviours rather than just dangerous killing machines. Studying the vision of sharks m ....Aquatic eye design: sharks and rays as models of underwater colour and luminance vision. Sharks are usually assumed to be colour blind. We have discovered that they may in fact see colour very well and that the eyes of different species are adapted to their particular lifestyles. Our research will help to raise the profile of sharks and portray them as animals with advanced sensory systems and complex visual behaviours rather than just dangerous killing machines. Studying the vision of sharks may also help to reduce the number (currently >50,000) that are killed each year as bycatch by Australian long-line fisheries and make a valuable contribution to one of Australia's National Research Priorities (an Environmentally Sustainable Australia) for managing and conserving our biodiversity.Read moreRead less