Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to ....Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to handle the huge quantities of genetic data and the complexity of evolution itself. An important expected outcome of this project will be the development and release of freely-available software that incorporates these new methods. This project expects to benefit scientists who need to infer phylogenies from genomic data. Read moreRead less
New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely nove ....New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely novel way to test hypotheses of microsatellite diversity. Our research is inter-disciplinary in that we will bridge the gap between molecular phylogenetics and molecular evolution and in so doing make a major advancement in this emerging field.Read moreRead less
Climate change and cryptic biodiversity in the Australian arid-zone: Molecular phylogeny-based assessment of conservation priorities. Australia's arid zone comprises two thirds of the country yet from a climate change, biodiversity, and conservation point of view it has received little attention relative to eastern Australia. The project will address broad questions in evolutionary biology with unique Australian systems, make a world class contribution to the fields of phylogeography, molecular ....Climate change and cryptic biodiversity in the Australian arid-zone: Molecular phylogeny-based assessment of conservation priorities. Australia's arid zone comprises two thirds of the country yet from a climate change, biodiversity, and conservation point of view it has received little attention relative to eastern Australia. The project will address broad questions in evolutionary biology with unique Australian systems, make a world class contribution to the fields of phylogeography, molecular phylogenetics and conservation genetics and contribute substantially to the continued training of high quality research students and postdoctoral fellows. The project directly addresses two National Priority Research Areas and will supply of critical information to the eight biggest of the 57 Natural Resource Management Regions. Read moreRead less
Comparative phylogeography and conservation genetics of Australia's biodiversity hotspot. Southwestern Australia has been identified as one of the world's 25 biodiversity hotspots. The project will address broad questions in evolutionary biology with unique Australian systems, make a world class contribution to the fields of phylogeography, molecular phylogenetics and conservation genetics and contribute substantially to the continued training of high quality research students. I am a foundation ....Comparative phylogeography and conservation genetics of Australia's biodiversity hotspot. Southwestern Australia has been identified as one of the world's 25 biodiversity hotspots. The project will address broad questions in evolutionary biology with unique Australian systems, make a world class contribution to the fields of phylogeography, molecular phylogenetics and conservation genetics and contribute substantially to the continued training of high quality research students. I am a foundation member of the new ARC Environmental Futures Network: Discovering the Past and Present to Shape the Future. One of its primary listed objectives is "documenting Australia's biodiversity: recognising, understanding and managing key hotspots". My research plan fits in precisely with this research agenda. Read moreRead less
Australia's monsoon tropical flora: invader or relict? The monsoonal tropics is a large region with unique yet poorly understood biodiversity. It is undergoing rapid agricultural, urban and tourist development, all of which threaten the sustainability of that biodiversity. The region includes three World Heritage areas, all with flora in their listed values: Kakadu National Park, Purnulu NP (Bungle Bungles) and Riversleigh. Additionally, the Kimberley is considered one of the last great wilderne ....Australia's monsoon tropical flora: invader or relict? The monsoonal tropics is a large region with unique yet poorly understood biodiversity. It is undergoing rapid agricultural, urban and tourist development, all of which threaten the sustainability of that biodiversity. The region includes three World Heritage areas, all with flora in their listed values: Kakadu National Park, Purnulu NP (Bungle Bungles) and Riversleigh. Additionally, the Kimberley is considered one of the last great wilderness areas in the world. This project will help us understand the evolutionary and geographic origins of the biodiversity of the monsoonal tropics, including the World Heritage areas, and it will identify those components that are uniquely Australian and therefore have the greatest heritage values.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100544
Funder
Australian Research Council
Funding Amount
$344,682.00
Summary
The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the ....The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the primary evolutionary forces on the genome, and test these methods using simulations. The new framework of genomic analysis will be disseminated through an intuitive software package, and will be used to estimate with unprecedented confidence the history of diversification and genome evolution of marsupials.Read moreRead less
Unravelling the molecular diversity and evolution of centipede venoms. The project intends to improve understanding of venom evolution in centipedes. Venoms have emerged as a rich source of pharmacological tools with potential for development into therapeutics and bioinsecticides. However, venoms-based discovery has been limited by the narrow taxonomical range of animals studied, with many groups of venomous animals overlooked. One such group is centipedes, whose venoms contain diverse toxins th ....Unravelling the molecular diversity and evolution of centipede venoms. The project intends to improve understanding of venom evolution in centipedes. Venoms have emerged as a rich source of pharmacological tools with potential for development into therapeutics and bioinsecticides. However, venoms-based discovery has been limited by the narrow taxonomical range of animals studied, with many groups of venomous animals overlooked. One such group is centipedes, whose venoms contain diverse toxins that differ between taxa. This project aims to provide an insight into centipede venom evolution, and how it might be constrained by venom-gland morphology. This study seeks to contribute to our understanding of protein evolution and direct biodiscovery efforts around centipede venom.Read moreRead less
Distinguishing among patterns of extinction and speciation through geological and climatic change: a molecular modelling approach. This research will enhance our understanding of the ancient origins of Australia's unique floral heritage. By developing new molecular modelling methods, it will strengthen Australia's position at the cutting edge of evolutionary phylogenetics. When Australia separated from Gondwana by continental drift 32 million years ago, the changed ocean circulation patterns tri ....Distinguishing among patterns of extinction and speciation through geological and climatic change: a molecular modelling approach. This research will enhance our understanding of the ancient origins of Australia's unique floral heritage. By developing new molecular modelling methods, it will strengthen Australia's position at the cutting edge of evolutionary phylogenetics. When Australia separated from Gondwana by continental drift 32 million years ago, the changed ocean circulation patterns triggered global climate change. The result was turnover of biota world-wide and dramatic changes within Australia. We will develop new insights into the rate and mode of these changes that will have international significance. Understanding the long-term turnover of flora from previous global climate changes will help to predict the impact of current and future climate change.Read moreRead less
Were the Tertiary radiations of the Australian flora synchronous? A molecular phylogenetic approach. The fossil record shows that in a short period from about 20 Mya, the ancestral Gondwanan rainforest gave way to the unique Australian ?sclerophyll? flora dominated by eucalypts, acacias and casuarinas. This coincided with a drying climate and the advent of fire. It is hypothesized that ?explosive? evolutionary radiations rapidly increased the number of sclerophyll species, rather than a mere r ....Were the Tertiary radiations of the Australian flora synchronous? A molecular phylogenetic approach. The fossil record shows that in a short period from about 20 Mya, the ancestral Gondwanan rainforest gave way to the unique Australian ?sclerophyll? flora dominated by eucalypts, acacias and casuarinas. This coincided with a drying climate and the advent of fire. It is hypothesized that ?explosive? evolutionary radiations rapidly increased the number of sclerophyll species, rather than a mere range expansion of pre-existing species. In a novel approach, molecular phylogenies of several distantly related plant groups will be used to test whether explosive evolutionary radiations took place simultaneously and to identify the environmental triggers.Read moreRead less
Evolution of Australia's globally unique hotspot of floral diversity. Australia has a globally recognised biodiversity hotspot, the southwest of Western Australia, but this unique eucalypt-dominated flora is threatened. This project will gain new insights into the evolutionary processes that generate and maintain such diversity, their vulnerability; and how the iconic eucalypts came to dominate the Australian landscape.