Was an ancient bird-like sex chromosome system ancestral to reptiles and mammals? Recent discoveries reveal amazing similarity in the sex chromosomes of distantly related animals. This project will use advanced DNA technology to explore diverse sex chromosomes in reptiles to discover whether this signifies ancient and unsuspected common ancestry, or the convergent redeployment of genes and chromosomes predisposed to determine sex.
Genomic signatures of adaptive diversification in woodland Eucalyptus. This project aims to map the sources of adaptive alleles underlying diversification is to reveal insights into the mechanisms of speciation. The source of the raw material for evolution can have significant impacts on the speed with which populations can adapt. An emerging pattern in speciation research is the importance of ancient alleles and introgressed genes, which differ in the genomic signatures left by selection. Eucal ....Genomic signatures of adaptive diversification in woodland Eucalyptus. This project aims to map the sources of adaptive alleles underlying diversification is to reveal insights into the mechanisms of speciation. The source of the raw material for evolution can have significant impacts on the speed with which populations can adapt. An emerging pattern in speciation research is the importance of ancient alleles and introgressed genes, which differ in the genomic signatures left by selection. Eucalyptus offers a unique opportunity to explore these modes of evolution using the latest genomic tools. Improving our understanding of adaptation and genetic variation in woodland eucalypts is expected to make a significant contribution to their conservation, management and restoration.Read moreRead less
Genome evolution & adaptation of the multinuclear wheat stripe rust fungus. Animals and plants package their genomes into a single nucleus within each cell. In contrast, millions of fungal species accommodate multiple nuclei containing individual haploid genomes. It is currently unknown what the evolutionary implications are for this unusual genome division into multiple nuclei. Here we explore the evolutionary consequences of genome division into multiple nuclei for the first time by applying c ....Genome evolution & adaptation of the multinuclear wheat stripe rust fungus. Animals and plants package their genomes into a single nucleus within each cell. In contrast, millions of fungal species accommodate multiple nuclei containing individual haploid genomes. It is currently unknown what the evolutionary implications are for this unusual genome division into multiple nuclei. Here we explore the evolutionary consequences of genome division into multiple nuclei for the first time by applying cutting edge genome biology tools and algorithms. The economically significant study system is the devastating wheat stripe rust fungus. This pathogen costs Australian farmers over $100 million a year. New understanding is expected to lead to better disease management, reduced fungicide applications, and increased yields.Read moreRead less
Understanding the role of endogenous siRNAs in the maintenance of genomic defenses. The inappropriate expression of retrotransposons can cause increased genomic instability. The underlying molecular pathways that control retrotransposon expression are not known. This project proposes to investigate this question at a molecular level how naturally occurring small endogenous noncoding RNAs (endo-siRNAs) enforce the epigenetic silencing of retrotransposons and examine the likely impact of endo-siRN ....Understanding the role of endogenous siRNAs in the maintenance of genomic defenses. The inappropriate expression of retrotransposons can cause increased genomic instability. The underlying molecular pathways that control retrotransposon expression are not known. This project proposes to investigate this question at a molecular level how naturally occurring small endogenous noncoding RNAs (endo-siRNAs) enforce the epigenetic silencing of retrotransposons and examine the likely impact of endo-siRNAs expression in the packaging and maintenance of retrotransposons. Understanding this fundamental question will advance the scientific knowledge of small RNA functions in our genomic defense systems. Read moreRead less
Diatom lipids to reveal sea-ice history in remote Antarctic regions. This project aims to understand seasonal Antarctic sea-ice extent using molecular, geochemical, elemental and genomic characteristics of specific marine phytoplankton (diatoms). Little is known of the seasonal sea-ice variation and the position of the summer sea-ice extent a million years before satellite records, but this information is critical to determining air-sea gas exchange and ecosystem food web regulation. This projec ....Diatom lipids to reveal sea-ice history in remote Antarctic regions. This project aims to understand seasonal Antarctic sea-ice extent using molecular, geochemical, elemental and genomic characteristics of specific marine phytoplankton (diatoms). Little is known of the seasonal sea-ice variation and the position of the summer sea-ice extent a million years before satellite records, but this information is critical to determining air-sea gas exchange and ecosystem food web regulation. This project will unite geochemical and biological approaches to provide the data to improve past Antarctic ecosystem and climate models where sea-ice data is missing. Studying diatom biomarkers in deep sea cores from Australia’s Southern Ocean will redefine knowledge of Antarctic climate and provide data necessary to improve global ecosystem and climate models.Read moreRead less
Life history responses to habitat heterogeneity and implications for conservation. This exciting new research project will provide a novel understanding of how animals respond and adapt to environmental variation. This will fill a critical gap between ecological theory and real-world populations and initiate a major shift in how we view the relationship between environments and the species that inhabit them. Natural resource use practices like forestry are rarely considered compatible with biodi ....Life history responses to habitat heterogeneity and implications for conservation. This exciting new research project will provide a novel understanding of how animals respond and adapt to environmental variation. This will fill a critical gap between ecological theory and real-world populations and initiate a major shift in how we view the relationship between environments and the species that inhabit them. Natural resource use practices like forestry are rarely considered compatible with biodiversity conservation. This research will provide on-the-ground management recommendations to integrate such land uses with conservation, thereby providing both economic and conservation benefits to the Australian community.Read moreRead less
Integrating population perspectives in Asian environmental debates. Sustainable development in Asia is crucial for the future welfare of all Asians, and for Australia. The population of Asia is over 60 percent of global population and the region is rapidly urbanizing and industrializing, thus creating an ever more onerous environmental footprint. The economic analytical work underpinning the assessment and amelioration of environmental challenges in Asia has long utilized simple population proje ....Integrating population perspectives in Asian environmental debates. Sustainable development in Asia is crucial for the future welfare of all Asians, and for Australia. The population of Asia is over 60 percent of global population and the region is rapidly urbanizing and industrializing, thus creating an ever more onerous environmental footprint. The economic analytical work underpinning the assessment and amelioration of environmental challenges in Asia has long utilized simple population projections. This project's methodologies will inform better policy and public debate to ensure that governments have more realistic understandings of the interaction between human population, human welfare and environmental integrity.Read moreRead less
Evolution of cooperative breeding in birds. The incidence of cooperative breeding in birds varies from 0 to 100% between families of birds, and from <1 to >25% among birds from different regions. However, there has been no theory that successfully predicts these differences. Recent comparative analysis shows the differences result largely from the early evolution of obligate cooperative breeding in some groups, and their subsequent slow rates of speciation. I will use model systems to investiga ....Evolution of cooperative breeding in birds. The incidence of cooperative breeding in birds varies from 0 to 100% between families of birds, and from <1 to >25% among birds from different regions. However, there has been no theory that successfully predicts these differences. Recent comparative analysis shows the differences result largely from the early evolution of obligate cooperative breeding in some groups, and their subsequent slow rates of speciation. I will use model systems to investigate how birds can become committed to cooperative breeding despite the inevitable conflicts, and how one group of birds have been freed from the general rules governing the evolution of sociality.Read moreRead less
Can inbreeding avoidance cause the evolution of sex-biased dispersal? This project aims to combine unique long-term data with a novel Citizen Science approach to seek to provide the first complete test of the hypothesis that inbreeding avoidance can cause one of the best known patterns in mammal and bird societies - sex differences in when and how far juveniles disperse. Dispersal is a critically important ecological and evolutionary process, as it influences the fate of populations, and also de ....Can inbreeding avoidance cause the evolution of sex-biased dispersal? This project aims to combine unique long-term data with a novel Citizen Science approach to seek to provide the first complete test of the hypothesis that inbreeding avoidance can cause one of the best known patterns in mammal and bird societies - sex differences in when and how far juveniles disperse. Dispersal is a critically important ecological and evolutionary process, as it influences the fate of populations, and also determines the individuals with which a disperser will spend the remainder of its life. It therefore shapes the likelihood that kin will interact to cooperate or compete, and determines the pool of individuals with which the disperser can mate.Read moreRead less
Sympatric speciation in Australian sexually deceptive orchids. Speciation has generated the diversity of life, yet the mechanisms of speciation remain poorly understood. Chiloglottis orchids are pollinated by highly specific sexually attracted male pollinators-an intriguing and predominantly Australian pollination mechanism. New evidence indicates these orchids offer novel opportunities to illuminate the evolutionary processes of speciation. This project will integrate new and powerful molecul ....Sympatric speciation in Australian sexually deceptive orchids. Speciation has generated the diversity of life, yet the mechanisms of speciation remain poorly understood. Chiloglottis orchids are pollinated by highly specific sexually attracted male pollinators-an intriguing and predominantly Australian pollination mechanism. New evidence indicates these orchids offer novel opportunities to illuminate the evolutionary processes of speciation. This project will integrate new and powerful molecular laboratory procedures with field studies to investigate the mechanisms of speciation within the genus. These orchids may provide rare examples of sympatric speciation-the evolution of species in the absence of geographic isolation. This is currently a speciation mechanism of current and intense research interest worldwide.Read moreRead less