Discovery Early Career Researcher Award - Grant ID: DE160100685
Funder
Australian Research Council
Funding Amount
$372,000.00
Summary
Historical pest genomes inform debate about how rapid evolution proceeds. This project plans to compare the genomes of archived and contemporary specimens to discover how two key Australian pest moths have adapted to insecticides, aiding prediction of how they may respond in the future. Agricultural pest species are often capable of rapid adaptation to insecticides, resulting in widespread genetic resistance. Does this resistance build on existing genetic variation, or are fresh mutations used t ....Historical pest genomes inform debate about how rapid evolution proceeds. This project plans to compare the genomes of archived and contemporary specimens to discover how two key Australian pest moths have adapted to insecticides, aiding prediction of how they may respond in the future. Agricultural pest species are often capable of rapid adaptation to insecticides, resulting in widespread genetic resistance. Does this resistance build on existing genetic variation, or are fresh mutations used to produce a fast adaptive response? How do adaptive strategies differ among key Australian pests? This project aims to answer these questions and advance understanding of mechanisms that underpin rapid evolution to improve approaches toward pest management and agricultural protection.Read moreRead less
The genetics of adaptation: changing developmental trajectories in eucalypts. During their life cycles, many animals and plants undergo genetically programmed changes in form. Such changes may be dramatic and rapid as seen in insect metamorphoses or plant heteroblasty, and may have ecological, evolutionary and even economic consequences. The project aims to identify the genes controlling such transitions in Australia's eucalypts.
Understanding diet designs that break life history trade-offs. The aim of this project is to understand the mechanisms by which organisms use nutrition to enhance fitness. Food availability is a key predictor of evolutionary fitness. Surprisingly, recent data shows that some key assumptions informing how these predictions are realised are not strictly correct, thus exposing a lack of important mechanistic knowledge. This project seeks to understand these mechanisms. The project plans to use nove ....Understanding diet designs that break life history trade-offs. The aim of this project is to understand the mechanisms by which organisms use nutrition to enhance fitness. Food availability is a key predictor of evolutionary fitness. Surprisingly, recent data shows that some key assumptions informing how these predictions are realised are not strictly correct, thus exposing a lack of important mechanistic knowledge. This project seeks to understand these mechanisms. The project plans to use novel genomics techniques to develop diets that support or improve fitness under circumstances such as stress or ageing, and to understand the molecular underpinnings of these improvements. Project outcomes may expand academic knowledge of fundamental nutritional biochemistry, and improve predictions of species’ responses to environmental change.Read moreRead less
Understanding evolution of dominant bacteria inhabiting the rodent gut . The gut microbiome is central to animal health and immune function, however we have an incomplete understanding of how this important symbiotic ecosystem evolved. By approaching this knowledge gap from a historical perspective and using real-time observation, this project will address how the gut community evolved with the rodent host and how members of that community respond to new selective pressures. The significance of ....Understanding evolution of dominant bacteria inhabiting the rodent gut . The gut microbiome is central to animal health and immune function, however we have an incomplete understanding of how this important symbiotic ecosystem evolved. By approaching this knowledge gap from a historical perspective and using real-time observation, this project will address how the gut community evolved with the rodent host and how members of that community respond to new selective pressures. The significance of these findings is in their capacity to inform our understanding of the relationship between host and microbe, not only within a key model system, but by extrapolation to other host-microbe systems. Read moreRead less
Characterisation of tumour variants of Devil Facial Tumour Disease. This project will take a new approach to cancer research by studying the evolution of Devil Facial Tumour Disease. The results will directly contribute to the conservation management of the Tasmanian devil, as well as generating new information on tumour growth, metastasis and emergence of resistance.
Coral-associated viruses: pathogens, mutualists and agents of evolution? Corals host numerous organisms, of which viruses are the least studied. The aim of this project is to characterise the viruses associated with corals and to obtain a detailed understanding of the critical roles that viruses play in coral health, coral bleaching and adaptation of corals to climate change.
Sex and bottlenecks: understanding the evolutionary dynamics of bacterial adaptation. Bacteria can rapidly adapt to changing environments, often with devastating consequences for humans. However, this adaptive evolution is often limited by strong reductions in population size, in particular during transmission from one host to another. This project aims to investigate whether recombination in bacteria can overcome the limits that such bottlenecks impose on the rate of adaptation. To this end, it ....Sex and bottlenecks: understanding the evolutionary dynamics of bacterial adaptation. Bacteria can rapidly adapt to changing environments, often with devastating consequences for humans. However, this adaptive evolution is often limited by strong reductions in population size, in particular during transmission from one host to another. This project aims to investigate whether recombination in bacteria can overcome the limits that such bottlenecks impose on the rate of adaptation. To this end, it will construct mathematical models and complement them with evolution experiments in bacterial populations. Results from this research aim to generate fundamental insights into the role of recombination in bacterial evolution and will provide guidance for developing management strategies for bacterial pathogens.Read moreRead less
Predicting the evolutionary dynamics of adaptation. This project aims to address the question of how we can predict adaptive evolution. The project aims to probe the limits of evolutionary predictions by using a model system of bacterial populations that adapt to the presence of multiple stressors. This will be combined with high-throughput fitness measurements, whole genome sequencing and computer simulations. Anticipated outcomes include novel insights into deep questions regarding the structu ....Predicting the evolutionary dynamics of adaptation. This project aims to address the question of how we can predict adaptive evolution. The project aims to probe the limits of evolutionary predictions by using a model system of bacterial populations that adapt to the presence of multiple stressors. This will be combined with high-throughput fitness measurements, whole genome sequencing and computer simulations. Anticipated outcomes include novel insights into deep questions regarding the structure of fitness landscapes and the repeatability, predictability and contingency of adaptive evolution. The project is expected to provide significant benefits, informing the development of improved strategies for managing pathogen resistance to antimicrobial drugs.Read moreRead less
The dynamics of evolution: How horizontal gene transfer drives the diversification and adaptation of complex, bacterial communities. The genetic exchange between populations is a prerequisite for the long-term evolution of bacteria, however its short-term dynamics are largely unexplored. This project aims to define the temporal dynamics of gene transfer and how it shapes the genetic composition of entire bacterial communities. Using innovative DNA sequencing technologies and bioinformatics, This ....The dynamics of evolution: How horizontal gene transfer drives the diversification and adaptation of complex, bacterial communities. The genetic exchange between populations is a prerequisite for the long-term evolution of bacteria, however its short-term dynamics are largely unexplored. This project aims to define the temporal dynamics of gene transfer and how it shapes the genetic composition of entire bacterial communities. Using innovative DNA sequencing technologies and bioinformatics, This project aims to offer a significant new understanding of the short-term diversification of communities and how different evolutionary forces shape bacterial function. It will show how bacterial systems can adapt to new environmental conditions and the effect on essential ecosystem functions.Read moreRead less
Evolution and role of neo-sex chromosomes in mitonuclear co-evolution. This project aims to characterize the evolution of novel, extended sex chromosomes in an Australian bird, then elucidate their role in climate-associated adaptive evolution. The species falls into two lineages bearing distinct mitochondrial genomes and nuclear-encoded mitochondrial genes carried on sex chromosomes. The project aims to test whether this extraordinary genome arrangement is splitting the species into two forms: ....Evolution and role of neo-sex chromosomes in mitonuclear co-evolution. This project aims to characterize the evolution of novel, extended sex chromosomes in an Australian bird, then elucidate their role in climate-associated adaptive evolution. The species falls into two lineages bearing distinct mitochondrial genomes and nuclear-encoded mitochondrial genes carried on sex chromosomes. The project aims to test whether this extraordinary genome arrangement is splitting the species into two forms: one adapted to hotter, drier environments, one to milder ones. This would be tackled using an innovative combination of genomics, cytogenetics, and metabolic data. Understanding the mechanisms at play would represent a major advance in ecology and evolution, with potential implications for conservation management.Read moreRead less