Mechanistic characterisation of genotype x environment interactions in sorghum and arabidopsis. Sorghum is an economically important cereal crop for Australia. In Australia, sorghum is used as a staple animal feed and it is very important for the live stock industry. With the predicted changes of temperature and rainfall patterns due to climate change, negative effects on sorghum yield are expected, which can have adverse effects on Australian economy. Our studies will identify and mark genes th ....Mechanistic characterisation of genotype x environment interactions in sorghum and arabidopsis. Sorghum is an economically important cereal crop for Australia. In Australia, sorghum is used as a staple animal feed and it is very important for the live stock industry. With the predicted changes of temperature and rainfall patterns due to climate change, negative effects on sorghum yield are expected, which can have adverse effects on Australian economy. Our studies will identify and mark genes that regulate flowering and seed production in sorghum in response to changes in temperature and light interactions. These studies will help to develop novel sorghum varieties with desirable characters through plant-breeding programmes.Read moreRead less
Sequencing and assembling microbial community metagenomes in real-time. This project aims to assemble metagenomes directly from environmental samples using nanopore sequencing. Short-read approaches to metagenomics cannot assemble mixed genomes from an environmental sample, so focus on describing which species and genes are present. Long-read nanopore sequencing enables the assembly of full genomes of multiple species in a sample. Assembling complete genomes in important resources such as water ....Sequencing and assembling microbial community metagenomes in real-time. This project aims to assemble metagenomes directly from environmental samples using nanopore sequencing. Short-read approaches to metagenomics cannot assemble mixed genomes from an environmental sample, so focus on describing which species and genes are present. Long-read nanopore sequencing enables the assembly of full genomes of multiple species in a sample. Assembling complete genomes in important resources such as water and soil should lead to deeper understanding of the dynamics, variation and transfer of genetic material within these resources’ microbial communities, strategies to manage microbial diversity, and improved productivity and long-term sustainability for these resources.Read moreRead less
Molecular switches and genetic consequences of grain retention in cereals. Grain retention at maturity was key for crop domestication and laid the basis for farming. Wheat and barley have evolved a novel mechanism for ensuring grain retention and, although the genes are known, the mechanisms for action are not. Grain dispersal in the wild relatives involves highly targeted changes in the walls of a small number of cells. This project will explore how the two identified genes control this proces ....Molecular switches and genetic consequences of grain retention in cereals. Grain retention at maturity was key for crop domestication and laid the basis for farming. Wheat and barley have evolved a novel mechanism for ensuring grain retention and, although the genes are known, the mechanisms for action are not. Grain dispersal in the wild relatives involves highly targeted changes in the walls of a small number of cells. This project will explore how the two identified genes control this process and clarify their mode of action. The genes ensuring grain retention have been so critical for domestication that the region surrounding them has become genetically fixed. The project will assess the implication of fixation on genetic diversity and develop options to bring novel variation into breeding programs.Read moreRead less
Tackling Atmospheric Chemistry Grand Challenges in the Southern Hemisphere. The project aims to provide a southern hemisphere perspective on current challenges in atmospheric chemistry: air quality, oxidation capacity, stratospheric change, and chemistry–climate interactions. Australia’s geographic position in the relatively clean southern hemisphere allows a unique opportunity to study environments with limited human influence, an opportunity that has largely been lost in the more populous nort ....Tackling Atmospheric Chemistry Grand Challenges in the Southern Hemisphere. The project aims to provide a southern hemisphere perspective on current challenges in atmospheric chemistry: air quality, oxidation capacity, stratospheric change, and chemistry–climate interactions. Australia’s geographic position in the relatively clean southern hemisphere allows a unique opportunity to study environments with limited human influence, an opportunity that has largely been lost in the more populous northern hemisphere. The intended outcomes of the project include validated ground-based and satellite datasets for monitoring Australia’s air quality, improved atmospheric models for predicting future atmospheric change, and a deeper understanding of the processes driving atmospheric composition worldwide.Read moreRead less
Australia's native sorghums: a model for testing plant adaptation theories. This proposal tests an emerging theory that allocation of resources by plants to growth or defence are interrelated, not alternatives as currently assumed. Like many crops, sorghum produces toxic cyanide, especially during droughts but its wild relatives make much less. This project aims to discover why cyanide is so common in domesticated plants and why levels increase with stress. This has important implications for de ....Australia's native sorghums: a model for testing plant adaptation theories. This proposal tests an emerging theory that allocation of resources by plants to growth or defence are interrelated, not alternatives as currently assumed. Like many crops, sorghum produces toxic cyanide, especially during droughts but its wild relatives make much less. This project aims to discover why cyanide is so common in domesticated plants and why levels increase with stress. This has important implications for developing crops that are high yielding and also climate resilient. Expected outcomes include full genome sequences for all of Australia’s unique native sorghums, confirmation of new theories on the interrelationships between defence and growth and identification of new traits vital for developing the crops of the future. Read moreRead less
Reconstructing wheat evolution using ancient DNA. The domestication of wild grasses by farmers was a step change in human history; it led to the emergence of modern cereals and with them, western civilisation. This project will apply modern DNA sequencing methods to 5000-year-old cereal seeds to reconstruct the history of wheat, barley and other crops, and identify lost ancient forms and diversity.
Gravity Current Driven Smoke Dispersion In a Stratified Ambient. Smoke from bushfires transported by gravity currents, and known to occur nationwide, caused the shutdown of businesses, education and events in Canberra in 2019. Recent scientific investigations have shown that the speed of propagation and concentration of smoke in these three-dimensional gravity currents have a long term ‘memory’ of their initial configuration. In this project, high-fidelity computational and experimental techniq ....Gravity Current Driven Smoke Dispersion In a Stratified Ambient. Smoke from bushfires transported by gravity currents, and known to occur nationwide, caused the shutdown of businesses, education and events in Canberra in 2019. Recent scientific investigations have shown that the speed of propagation and concentration of smoke in these three-dimensional gravity currents have a long term ‘memory’ of their initial configuration. In this project, high-fidelity computational and experimental techniques will be used to elucidate the fundamental mechanisms of gravity current entrainment and propagation. This knowledge will set a strong foundation to improve operational forecasts of smoke transport that will allow government agencies to better respond to the negative impact of these complicated flows.Read moreRead less
Passive biofiltration processes for nitrogen removal from polluted waters. Traditional urban wastewater treatment is energy and resource demanding. By combining principles of Water Sensitive Urban Design (WSUD) with advanced pollutant removal processes, we will create necessary knowledge to underpin development of novel sustainable urban water treatment systems. This project aims to understand and utilise Simultaneous Nitrification, Anammox and Denitrification (SNAD) processes within passive pla ....Passive biofiltration processes for nitrogen removal from polluted waters. Traditional urban wastewater treatment is energy and resource demanding. By combining principles of Water Sensitive Urban Design (WSUD) with advanced pollutant removal processes, we will create necessary knowledge to underpin development of novel sustainable urban water treatment systems. This project aims to understand and utilise Simultaneous Nitrification, Anammox and Denitrification (SNAD) processes within passive plant-soil-based biofilters for cost-effective removal of nitrogen from a range of polluted urban water sources. The project will open a potential for a new technological advancements in urban water management, while simultaneously providing benefits to the environment and community through greening and waterway protection.Read moreRead less
The Effect of Fuel Type on Health and Environmental Risks Caused by Motor Vehicle Emissions. Motor vehicles constitute one of the most significant sources of air pollutants but the state of knowledge on the quantity of some of these does not permit for projection of the risk they create. This project aims at quantification of emissions of pollutants contributing to deterioration of health, ozone formation, global warming and acid rain as a function of fuel type, using a novel on-road sampling m ....The Effect of Fuel Type on Health and Environmental Risks Caused by Motor Vehicle Emissions. Motor vehicles constitute one of the most significant sources of air pollutants but the state of knowledge on the quantity of some of these does not permit for projection of the risk they create. This project aims at quantification of emissions of pollutants contributing to deterioration of health, ozone formation, global warming and acid rain as a function of fuel type, using a novel on-road sampling method. Resultantly, a holistic picture of integrated health and environmental risk will be developed that will build a scientific foundation for future fuel,transport and land use to protect the community and the environment.Read moreRead less
Improving water quality modelling by better understanding solute transport. Poor stream water quality is a critical problem in Australia and globally. Stream water quality depends directly on pathways and time taken for water to transport pollutants through catchments. Predicting these pathways is highly challenging and currently requires specialised data. This project aims to better model the movement of water from rainfall to streams, enable greatly improved use of water quality data routinely ....Improving water quality modelling by better understanding solute transport. Poor stream water quality is a critical problem in Australia and globally. Stream water quality depends directly on pathways and time taken for water to transport pollutants through catchments. Predicting these pathways is highly challenging and currently requires specialised data. This project aims to better model the movement of water from rainfall to streams, enable greatly improved use of water quality data routinely collected in Australia's catchments and thereby better predict water quality behaviour. Proposed field studies aim to support this development. The outcomes sought are improved planning and management of water quality in our rivers, lakes and estuaries, improved health of these water bodies and improved water supplies.Read moreRead less