Why is most of the genetic variance for complex traits undetected by large powerful screens of common variants? The genomics revolution has made it possible to measure thousands of DNA variants in individuals. These variants have been associated with phenotypic outcomes in a range of species. Paradoxically, even very large studies have only accounted for a fraction of the resemblance between relatives that we know exist. Our study will test three specific hypotheses to explain this paradox. A be ....Why is most of the genetic variance for complex traits undetected by large powerful screens of common variants? The genomics revolution has made it possible to measure thousands of DNA variants in individuals. These variants have been associated with phenotypic outcomes in a range of species. Paradoxically, even very large studies have only accounted for a fraction of the resemblance between relatives that we know exist. Our study will test three specific hypotheses to explain this paradox. A better understanding about the genetic architecture for complex traits will improve the efficiency of gene mapping methods, including applications in humans for traits related to productive ageing and a healthy start to life, will lead to more efficient selection programs in agricultural populations and will inform us with respect to past evolutionary events.Read moreRead less
Multidimensional unfolding: the latitude of acceptance and the structure of the single peaked response process in a multidimensional space. The latitude of acceptance and the operational function that structures the single peaked response process have only recently been understood as central to unidimensional models for the measurement of attitude, preference and choice. They have been neglected in multidimensional models. This project will formalise these two central components in a multidimens ....Multidimensional unfolding: the latitude of acceptance and the structure of the single peaked response process in a multidimensional space. The latitude of acceptance and the operational function that structures the single peaked response process have only recently been understood as central to unidimensional models for the measurement of attitude, preference and choice. They have been neglected in multidimensional models. This project will formalise these two central components in a multidimensional space. The operational function governs the relationship between any item-person distance and the latitude of acceptance defines a multidimensional hyper-sphere within which the more positive response is more likely. The project will articulate and operationalise these models for a range of typical response formats from ranking to pairwise preferences.Read moreRead less
Advancing the application of Rasch models to the level of tests: estimating person parameters independently of all test parameters. The project advances recent theoretical work on Rasch models which makes it possible to compare estimates of person locations on a scale independently of all properties of the tests to which they have responded. The project aims to circumvent the current methods of test equating where various distribution assumptions are implied.
Identifying genes causing thermal evolution of ectotherm body size. Cold-blooded animals increase in body size as they are found in populations at greater distances from the equator. These patterns are due to populations adapting to temperature. The aim of this project is to identify the genes involved in this adaptation process. We will do this by taking advantage of a well-studied body size cline in the vinegar fly on the east coast of Australia, and by building on an international collaborati ....Identifying genes causing thermal evolution of ectotherm body size. Cold-blooded animals increase in body size as they are found in populations at greater distances from the equator. These patterns are due to populations adapting to temperature. The aim of this project is to identify the genes involved in this adaptation process. We will do this by taking advantage of a well-studied body size cline in the vinegar fly on the east coast of Australia, and by building on an international collaboration between a leading UK and two Australian research groups. In doing so we will provide an explanation at the molecular level for one of the great unresolved phenomena in biology: why do cold-blooded animals get bigger in the cold? The research also leads to the potential to manipulate body size in animals.Read moreRead less
A Genomic Dissection of Natural Adaptation in Mate Recognition. Adaptation is a fundamental area of evolutionary biology but we know surprisingly little about its underlying genetic basis. As a process, adaptation poses several challenges for Australian society including bacterial evolution of resistance to antibiotics, HIV resistance to antiviral medications and the evolution of pesticide resistance in agricultural pests. This study will use a model system and genomic tools to test theoretical ....A Genomic Dissection of Natural Adaptation in Mate Recognition. Adaptation is a fundamental area of evolutionary biology but we know surprisingly little about its underlying genetic basis. As a process, adaptation poses several challenges for Australian society including bacterial evolution of resistance to antibiotics, HIV resistance to antiviral medications and the evolution of pesticide resistance in agricultural pests. This study will use a model system and genomic tools to test theoretical models of the genetic basis of adaptation. This integrative approach will enhance Australia's research profile in genomics and evolutionary biology. The project will provide emerging scientists with skills in areas including genomics, molecular biology, evolutionary biology and agricultural genetics.Read moreRead less
Maximising knowledge from dense SNP (single nucleotide polymorphisms) data using multi-locus analysis. The genomics revolution has made it possible to measure thousands of DNA variants in individuals. This information can be used in many ways, including to find genes that cause variation between individuals in a population and to estimate the size of the population in the past. Our study will lead an analysis method that will extract more information out of such data. This will improve the effi ....Maximising knowledge from dense SNP (single nucleotide polymorphisms) data using multi-locus analysis. The genomics revolution has made it possible to measure thousands of DNA variants in individuals. This information can be used in many ways, including to find genes that cause variation between individuals in a population and to estimate the size of the population in the past. Our study will lead an analysis method that will extract more information out of such data. This will improve the efficiency of gene mapping methods, including applications in humans for traits related to productive ageing and a healthy start to life, will allow the estimation of genetic relatedness and genetic variation in natural populations, and will lead to more efficient selection programs in agricultural populations.Read moreRead less
Sex and mutations - testing the genic capture hypothesis. The proposed project will use a novel method to test a major outstanding theoretical problem in evolutionary biology and behavioural ecology. This will strengthen Australian research in this field and contribute to the growing international recognition it currently receives. The new methods developed will be useful to other researchers interested in mutation, sexual selection and the evolution and maintenance of sex. Part of the project w ....Sex and mutations - testing the genic capture hypothesis. The proposed project will use a novel method to test a major outstanding theoretical problem in evolutionary biology and behavioural ecology. This will strengthen Australian research in this field and contribute to the growing international recognition it currently receives. The new methods developed will be useful to other researchers interested in mutation, sexual selection and the evolution and maintenance of sex. Part of the project will be conducted in collaboration with a leading researcher in the UK. This will strengthen the links between institution in Australia and the UK.Read moreRead less
Sexual selection and the accumulation of deleterious mutations. Mutation is the ultimate source of all genetic variation. Understanding the nature of mutation, its frequency, the distribution of effects, and the forces of selection that remove mutational load from populations is therefore a central concern of genetics. The accumulation of mutational load in endangered species and in human populations, where the forces of selection tend not to operate, has the potential to create serious proble ....Sexual selection and the accumulation of deleterious mutations. Mutation is the ultimate source of all genetic variation. Understanding the nature of mutation, its frequency, the distribution of effects, and the forces of selection that remove mutational load from populations is therefore a central concern of genetics. The accumulation of mutational load in endangered species and in human populations, where the forces of selection tend not to operate, has the potential to create serious problems. We will determine the efficacy of sexual selection in preventing deleterious mutations from accumulating in populations. This project will provide research training opportunities in quantitative genetics, an enabling discipline in Biology.Read moreRead less
Evidence-based improvement of statistical inference practices in psychology and other disciplines. The commonest ways that many researchers currently draw conclusions from their data have been shown to be inefficient, and often used incorrectly. This project will develop new, better statistical representations and software tools for data analysis. It will evaluate and demonstrate the effectiveness of these. Wide adoption of these techniques and tools will enhance the international reputation ....Evidence-based improvement of statistical inference practices in psychology and other disciplines. The commonest ways that many researchers currently draw conclusions from their data have been shown to be inefficient, and often used incorrectly. This project will develop new, better statistical representations and software tools for data analysis. It will evaluate and demonstrate the effectiveness of these. Wide adoption of these techniques and tools will enhance the international reputation and competitiveness of Australian psychological science. Adoption by Australian researchers across the social and behavioural sciences, and in other disciplines including medicine, economics and ecology, will improve the efficiency and effectiveness of Australian research, with consequential wide-ranging benefits to the Australian community.Read moreRead less
When to Flower - analysis of a novel genetic locus (FLH) that accelerates flowering. The development of plants is largely determined by the environment. The flowering time of some plants, including many crop species, is accelerated by vernalization, a long period of low temperature. Using a combination of genetic and molecular techniques in the model plant Arabidopsis, this project will characterise a novel locus, FLH that enhances the response to vernalization. The identification of FLH will si ....When to Flower - analysis of a novel genetic locus (FLH) that accelerates flowering. The development of plants is largely determined by the environment. The flowering time of some plants, including many crop species, is accelerated by vernalization, a long period of low temperature. Using a combination of genetic and molecular techniques in the model plant Arabidopsis, this project will characterise a novel locus, FLH that enhances the response to vernalization. The identification of FLH will significantly enhance our understanding of flowering time pathways, and may lead to the generation of plant varieties designed to flower faster or slower than usual.Read moreRead less