The sponge genome project and the evolution of multicellularity: using comparative genomics and developmental biology to reconstruct the first animals. Recently the entire genome from a living fossil - a sponge from the Great Barrier Reef - was sequenced (jointly supported by the ARC and US Department of Energy). As this genome is assembled and analysed, many of the fundamental biological processes that underlie the construction and evolution of all animals, including humans, will be revealed. ....The sponge genome project and the evolution of multicellularity: using comparative genomics and developmental biology to reconstruct the first animals. Recently the entire genome from a living fossil - a sponge from the Great Barrier Reef - was sequenced (jointly supported by the ARC and US Department of Energy). As this genome is assembled and analysed, many of the fundamental biological processes that underlie the construction and evolution of all animals, including humans, will be revealed. In addition, sponge genomics will fuel innovations in medicine and biotechnology. Specifically, sponges are renowned for their capacity to synthesise bioactive compounds used in drug development, and high-grade silica used for semi-conductor construction. This project will identify the gene networks controlling these biosynthetic processes.Read moreRead less
Variation in larval gene expression in a marine invertebrate: implications for population divergence via differential settlement response. Evolutionary and ecological functional genomics is an emerging field that integrates gene profiling technologies with experimental and field approaches of ecology and evolution. I take this approach to address a key problem in marine invertebrate biology: how do larvae respond to their environment and how does variation in this response influence the distribu ....Variation in larval gene expression in a marine invertebrate: implications for population divergence via differential settlement response. Evolutionary and ecological functional genomics is an emerging field that integrates gene profiling technologies with experimental and field approaches of ecology and evolution. I take this approach to address a key problem in marine invertebrate biology: how do larvae respond to their environment and how does variation in this response influence the distribution and evolution of a species? I will use a marine gastropod (abalone) model, for which there exists substantial development and population genetic data, and established aquaculture methodologies. Outcomes of this study will enhance knowledge of the stock structure of this and other commercial fisheries, as well as aquaculture efficiency.Read moreRead less
Testing indicators of genetic exchange and adaptation of populations, essential for biodiversity assessment and management. There will be diverse benefits from our testing and improvement of genetic indicators for exchange between populations and adaptive differentiation of populations. Managers and population biologists will have confidence in choice and use of these vital tools in sustainable use of our terrestrial and aquatic bioresources, as recommended by the federal State of Environment s ....Testing indicators of genetic exchange and adaptation of populations, essential for biodiversity assessment and management. There will be diverse benefits from our testing and improvement of genetic indicators for exchange between populations and adaptive differentiation of populations. Managers and population biologists will have confidence in choice and use of these vital tools in sustainable use of our terrestrial and aquatic bioresources, as recommended by the federal State of Environment system. Also, the use of these tools to identify differential genetic adaptations is the first step in bioprospecting, as well as revealing the raw material for natural and artificial populations to adapt to changes: soil loss, salinity, acidity, climate change. Forensic genetics will benefit from the improved tools for defining subpopulations.Read moreRead less
Microbial genomics of the southern ocean: monitoring environmental health. This program will derive an integrated understanding of microbial ecology which is essential for determining ways of preserving the health of the World's ecosystems. Through the development of a unique microbial genomics program, Australia will remain a world leader in Antarctic biology, strengthening Australia's reputation in technologically innovative scientific programs of global significance, training local scientists ....Microbial genomics of the southern ocean: monitoring environmental health. This program will derive an integrated understanding of microbial ecology which is essential for determining ways of preserving the health of the World's ecosystems. Through the development of a unique microbial genomics program, Australia will remain a world leader in Antarctic biology, strengthening Australia's reputation in technologically innovative scientific programs of global significance, training local scientists in cutting edge genomic biology and fostering the interests of the international community in sciences ranging from microbial ecology to climate change.Read moreRead less
The transcriptome, genome and metagenome of Acropora millepora: a model system for studying coral health and disease. Corals have an iconic significance for Australia, which has the best-preserved reef system in the world. The Great Barrier Reef is worth more than $6 billion per year to the Australian economy, and provides employment for 68000 people. The research will provide insights into the molecular bases of stress and disease in corals and the internal mechanisms by which corals attempt to ....The transcriptome, genome and metagenome of Acropora millepora: a model system for studying coral health and disease. Corals have an iconic significance for Australia, which has the best-preserved reef system in the world. The Great Barrier Reef is worth more than $6 billion per year to the Australian economy, and provides employment for 68000 people. The research will provide insights into the molecular bases of stress and disease in corals and the internal mechanisms by which corals attempt to combat them. The results will allow the design of strategies for better reef management, resulting in economic, environmental and social benefits for Australia.Read moreRead less
Population growth, genetic variation and adaptation in two Caulerpa species in southeastern Australia. This project will examine factors that influence the population growth, reproduction, genetic variation and adaptation in two seaweeds; the invasive Caulerpa taxifolia and the possibly invasive C. filiformis. A combination of surveys, modelling, molecular genetics and field experiments will be undertaken to achieve this. The current ambiguity surrounding the status of C. filiformis as an inva ....Population growth, genetic variation and adaptation in two Caulerpa species in southeastern Australia. This project will examine factors that influence the population growth, reproduction, genetic variation and adaptation in two seaweeds; the invasive Caulerpa taxifolia and the possibly invasive C. filiformis. A combination of surveys, modelling, molecular genetics and field experiments will be undertaken to achieve this. The current ambiguity surrounding the status of C. filiformis as an invasive species in Australia will be addressed by comparing DNA sequences of Australian and African plants. This project will provide critical data for managing invasive species, but more broadly, increase the current understanding of their biology and the factors important in their population growth and adaptation.Read moreRead less
Rapid mapping of genes for complex traits. This project will develop a new resource that will allow rapid identification of genes controlling complex traits. This world-leading resource will improve knowledge of diseases like diabetes and neurological diseases.
Linking mutant zebrafish phenotypes with their underlying genetic lesions. Zebrafish mutants have been generated with many interesting abnormalities, but to understand these abnormalities, the defective genes must be identified by positional cloning. We seek to identify the defective genes underpinning four mutants. Mutant #562 develops a normal nervous system which then undergoes rapid degeneration. The mutant flotte lotte has abnormal gut development. Two mutants with defective early blood for ....Linking mutant zebrafish phenotypes with their underlying genetic lesions. Zebrafish mutants have been generated with many interesting abnormalities, but to understand these abnormalities, the defective genes must be identified by positional cloning. We seek to identify the defective genes underpinning four mutants. Mutant #562 develops a normal nervous system which then undergoes rapid degeneration. The mutant flotte lotte has abnormal gut development. Two mutants with defective early blood formation will be studied. We will establish techniques for several steps that will be useful for all zebrafish mapping projects. We expect the genetic characterization of these mutants to provide new insights into nerve cell survival, gut development, and blood formation.Read moreRead less
Regulation of the EphA3 receptor tyrosine kinase in vertebrate development. The Eph/ephrin system has a critical role in normal embryonic development. Amongst vertebrates, the EphA3 gene is one of the most highly conserved genes in this system with critical roles in development of the visual system and in other developmental processes. Understanding how this gene is regulated will help us to understand the critical role of EphA3 in the basic biology of humans and other animals. This knowledge ma ....Regulation of the EphA3 receptor tyrosine kinase in vertebrate development. The Eph/ephrin system has a critical role in normal embryonic development. Amongst vertebrates, the EphA3 gene is one of the most highly conserved genes in this system with critical roles in development of the visual system and in other developmental processes. Understanding how this gene is regulated will help us to understand the critical role of EphA3 in the basic biology of humans and other animals. This knowledge may also shed light on the basis of congenital abnormalities and other pathological processes and possibly help us to understand how to prevent or treat these conditions.Read moreRead less
Molecular control of embryonic patterning: The function of Rhou gene in mediating response to WNT signalling. The scientific knowledge gained from this investigation of the early development of embryos will inform us of how the essential building blocks of the body are assembled, and provide insights into the genetic and developmental causes of birth defects. This will benefit the health professionals, the research community, the education sector and the general public, by underpinning the form ....Molecular control of embryonic patterning: The function of Rhou gene in mediating response to WNT signalling. The scientific knowledge gained from this investigation of the early development of embryos will inform us of how the essential building blocks of the body are assembled, and provide insights into the genetic and developmental causes of birth defects. This will benefit the health professionals, the research community, the education sector and the general public, by underpinning the formulation of new research hypotheses, enriching the curriculum and the provision of informed counselling. The embryological expertise developed for this project will enhance the nation's research capability through the sharing of skills and knowledge with a national network of academic and industrial research teams. Read moreRead less